RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 YWHABP31946 246 aaKnown RBP10.57□□□□□ -0.72
SS18-203ENST00000415083 MXI1P50539 228 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 GPC3P51654 580 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 SETQ01105 290 aaPredicted RBP10.57□□□□□ -0.72
SS18-203ENST00000415083 CDR2Q01850 454 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 GHRHRQ02643 423 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 KLF1Q13351 362 aaPredicted RBP10.57□□□□□ -0.72
SS18-203ENST00000415083 GALNTL6Q49A17 601 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 PREPLQ4J6C6 727 aaPredicted RBP10.57□□□□□ -0.72
SS18-203ENST00000415083 PARP9Q8IXQ6 854 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 NLGN1Q8N2Q7 840 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 PPM1KQ8N3J5 372 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 ACCSQ96QU6 501 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 TAAR1Q96RJ0 339 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 MYCBPQ99417 103 aaPredicted RBP10.57□□□□□ -0.72
SS18-203ENST00000415083 MCM8Q9UJA3 840 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 ZNF862O60290 1169 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 GJB6O95452 261 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 AGTP01019 485 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 SSTR3P32745 418 aaPredicted RBP10.57□□□□□ -0.72
SS18-203ENST00000415083 TRIP13Q15645 432 aaPredicted RBP10.57□□□□□ -0.72
SS18-203ENST00000415083 GKAP1Q5VSY0 366 aaPredicted RBP10.57□□□□□ -0.72
SS18-203ENST00000415083 C15orf39Q6ZRI6 1047 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 CPLX4Q7Z7G2 160 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 SGSM3Q96HU1 749 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 CCDC114Q96M63 670 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 FBXL18Q96ME1 805 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 ACTR5Q9H9F9 607 aaPredicted RBP10.57□□□□□ -0.72
SS18-203ENST00000415083 HERC5Q9UII4 1024 aaKnown RBP10.57□□□□□ -0.72
SS18-203ENST00000415083 GTF3C4Q9UKN8 822 aa10.57□□□□□ -0.72
SS18-203ENST00000415083 MAPK13O15264 365 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 RGS16O15492 202 aaPredicted RBP10.56□□□□□ -0.72
SS18-203ENST00000415083 LYPLA2O95372 231 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 ACSL3O95573 720 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 EDN1P05305 212 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 KRT17Q04695 432 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 CLEC16AQ2KHT3 1053 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 ACCSLQ4AC99 568 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 CCDC127Q96BQ5 260 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 ZNF653Q96CK0 615 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 MFSD14AQ96MC6 490 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 NAP1L3Q99457 506 aaPredicted RBP10.56□□□□□ -0.72
SS18-203ENST00000415083 TBX20Q9UMR3 447 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 GOLGA6L10A0A0M3HER8 536 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 PODXLO00592 558 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 SNX3O60493 162 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 NPTX2P47972 431 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 TAS2R40P59535 323 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 KCNJ2P63252 427 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 ACAD10Q6JQN1 1059 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 TLDC1Q6P9B6 456 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 SV2AQ7L0J3 742 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 HOOK3Q86VS8 718 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 UBL4BQ8N7F7 174 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 SYTL5Q8TDW5 730 aaPredicted RBP10.56□□□□□ -0.72
SS18-203ENST00000415083 FAM212AQ96EL1 285 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 GEMIN8Q9NWZ8 242 aaKnown RBP10.56□□□□□ -0.72
SS18-203ENST00000415083 PRKAG3Q9UGI9 489 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 PNMA3Q9UL41 463 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 MRPL11Q9Y3B7 192 aaKnown RBP10.56□□□□□ -0.72
SS18-203ENST00000415083 ICAM1P05362 532 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 FDX1P10109 184 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 CNGA1P29973 690 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 DSG3P32926 999 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 CCDC142Q17RM4 750 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 CYFIP1Q7L576 1253 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 CCDC105Q8IYK2 499 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 CPA5Q8WXQ8 436 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 TMEM206Q9H813 350 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 ARHGEF10LQ9HCE6 1279 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 PDLIM7Q9NR12 457 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 GRID1Q9ULK0 1009 aa10.56□□□□□ -0.72
SS18-203ENST00000415083 GOLGA6L7A0A1B0GV03 622 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 CCDC169A6NNP5 214 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 A8MUI8 341 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 RASGRF2O14827 1237 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 RGS20O76081 388 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 GGPS1O95749 300 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 RRM1P23921 792 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 MAP2K2P36507 400 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 QARSP47897 775 aaKnown RBP10.55□□□□□ -0.72
SS18-203ENST00000415083 NCALDP61601 193 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 KYNUQ16719 465 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 C6orf118Q5T5N4 469 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 LMBRD2Q68DH5 695 aaPredicted RBP10.55□□□□□ -0.72
SS18-203ENST00000415083 MAP4K3Q8IVH8 894 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 FAM151AQ8WW52 585 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 RMDN2Q96LZ7 410 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 DCLK3Q9C098 648 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 TRIM33Q9UPN9 1127 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 ZNF541Q9H0D2 1346 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 UBOX5O94941 541 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 FOXN2P32314 431 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 ITGA8P53708 1063 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 PTP4A2Q12974 167 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 ITIH4Q14624 930 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 PGM5Q15124 567 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 PPP2R5EQ16537 467 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 PCNX4Q63HM2 1172 aa10.55□□□□□ -0.72
SS18-203ENST00000415083 SPOPLQ6IQ16 392 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms