RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 MYCT1Q8N699 235 aa20.89■□□□□ 0.93
SF3A1-202ENST00000411423 C3orf58Q8NDZ4 430 aa20.89■□□□□ 0.93
SF3A1-202ENST00000411423 KCNN1Q92952 543 aa20.89■□□□□ 0.93
SF3A1-202ENST00000411423 SNX27Q96L92 541 aa20.89■□□□□ 0.93
SF3A1-202ENST00000411423 PHF7Q9BWX1 381 aaPredicted RBP20.89■□□□□ 0.93
SF3A1-202ENST00000411423 LARSQ9P2J5 1176 aaKnown RBP20.89■□□□□ 0.93
SF3A1-202ENST00000411423 ANKFY1Q9P2R3 1169 aa20.89■□□□□ 0.93
SF3A1-202ENST00000411423 FAM86C2PA6NEL3 165 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 NR1I2O75469 434 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 TADA2AO75478 443 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 TOM1L1O75674 476 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 FAM13AO94988 1023 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 MYBP10242 640 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 RPL17P18621 184 aaKnown RBP20.88■□□□□ 0.93
SF3A1-202ENST00000411423 KLRC2P26717 231 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 NMT1P30419 496 aaKnown RBP20.88■□□□□ 0.93
SF3A1-202ENST00000411423 SMTNP53814 917 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 STRN3Q13033 797 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 CBX2Q14781 532 aaPredicted RBP20.88■□□□□ 0.93
SF3A1-202ENST00000411423 SLC39A4Q6P5W5 647 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 DYMQ7RTS9 669 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 KRI1Q8N9T8 703 aaKnown RBP20.88■□□□□ 0.93
SF3A1-202ENST00000411423 CCDC94Q9BW85 323 aaPredicted RBP20.88■□□□□ 0.93
SF3A1-202ENST00000411423 EMILIN2Q9BXX0 1053 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 PANK2Q9BZ23 570 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 IKZF4Q9H2S9 585 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 ADAM7Q9H2U9 754 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 POMKQ9H5K3 350 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 STK39Q9UEW8 545 aa20.88■□□□□ 0.93
SF3A1-202ENST00000411423 VWA8A3KMH1 1905 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 MYMKA6NI61 221 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 CLCNKBP51801 687 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 MCL1Q07820 350 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 NOLC1Q14978 699 aaKnown RBP eCLIP20.87■□□□□ 0.93
SF3A1-202ENST00000411423 FOXD4L6Q3SYB3 417 aaPredicted RBP20.87■□□□□ 0.93
SF3A1-202ENST00000411423 ZBTB41Q5SVQ8 909 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 PRSS55Q6UWB4 352 aaPredicted RBP20.87■□□□□ 0.93
SF3A1-202ENST00000411423 FOXD4L3Q6VB84 417 aaPredicted RBP20.87■□□□□ 0.93
SF3A1-202ENST00000411423 ZPBP2Q6X784 338 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 RNF135Q8IUD6 432 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 DNAJC19Q96DA6 116 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 RPGRIP1Q96KN7 1286 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 FBXL18Q96ME1 805 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 TCHPQ9BT92 498 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 ZHX3Q9H4I2 956 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 PARVGQ9HBI0 331 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 MUTYHQ9UIF7 546 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 TBX20Q9UMR3 447 aa20.87■□□□□ 0.93
SF3A1-202ENST00000411423 K7ENM7 598 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 TRAK2O60296 914 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 FAM189A1O60320 539 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 F13A1P00488 732 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 ZSCAN22P10073 491 aaPredicted RBP20.86■□□□□ 0.93
SF3A1-202ENST00000411423 SP100P23497 879 aaPredicted RBP20.86■□□□□ 0.93
SF3A1-202ENST00000411423 TNFSF9P41273 254 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 UPP1Q16831 310 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 SLC10A6Q3KNW5 377 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 USP41Q3LFD5 358 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 TPRNQ4KMQ1 711 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 ZC2HC1CQ53FD0 456 aaPredicted RBP20.86■□□□□ 0.93
SF3A1-202ENST00000411423 RRAGBQ5VZM2 374 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 TMC5Q6UXY8 1006 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 GLYCTKQ8IVS8 523 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 TMEM87AQ8NBN3 555 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 RIN2Q8WYP3 895 aaPredicted RBP20.86■□□□□ 0.93
SF3A1-202ENST00000411423 C18orf25Q96B23 403 aaPredicted RBP20.86■□□□□ 0.93
SF3A1-202ENST00000411423 ACAP3Q96P50 834 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 POP1Q99575 1024 aaKnown RBP20.86■□□□□ 0.93
SF3A1-202ENST00000411423 CNTN3Q9P232 1028 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 STK17AQ9UEE5 414 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 RAPGEFL1Q9UHV5 662 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 TRIOO75962 3097 aa20.86■□□□□ 0.93
SF3A1-202ENST00000411423 TISP43B9A030 160 aa20.85■□□□□ 0.93
SF3A1-202ENST00000411423 PIGRP01833 764 aa20.85■□□□□ 0.93
SF3A1-202ENST00000411423 KRT18P05783 430 aaKnown RBP20.85■□□□□ 0.93
SF3A1-202ENST00000411423 KCNE1P15382 129 aa20.85■□□□□ 0.93
SF3A1-202ENST00000411423 STK38Q15208 465 aa20.85■□□□□ 0.93
SF3A1-202ENST00000411423 PPFIBP1Q86W92 1011 aa20.85■□□□□ 0.93
SF3A1-202ENST00000411423 SFR1Q86XK3 245 aa20.85■□□□□ 0.93
SF3A1-202ENST00000411423 DDX12PQ92771 950 aa20.85■□□□□ 0.93
SF3A1-202ENST00000411423 DZANK1Q9NVP4 752 aa20.85■□□□□ 0.93
SF3A1-202ENST00000411423 CCDC39Q9UFE4 941 aa20.85■□□□□ 0.93
SF3A1-202ENST00000411423 SF3B1O75533 1304 aaKnown RBP eCLIP20.84■□□□□ 0.932e-7■■■■■ 53.5
SF3A1-202ENST00000411423 PDCD11Q14690 1871 aaKnown RBP20.84■□□□□ 0.93
SF3A1-202ENST00000411423 ANKRD63C9JTQ0 380 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 TMEM189-UBE2V1I3L0A0 370 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 I3L4J1 428 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 SPTLC2O15270 562 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 ADAM12O43184 909 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 SPATA31D3P0C874 917 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 CXCL8P10145 99 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 BRCC3P46736 316 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 YARSP54577 528 aaKnown RBP20.84■□□□□ 0.93
SF3A1-202ENST00000411423 GTF2BQ00403 316 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 ITIH3Q06033 890 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 FAM171A1Q5VUB5 890 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 KIAA1841Q6NSI8 718 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 SPATA31D4Q6ZUB0 917 aa20.84■□□□□ 0.93
SF3A1-202ENST00000411423 APBB1IPQ7Z5R6 666 aaPredicted RBP20.84■□□□□ 0.93
SF3A1-202ENST00000411423 PALB2Q86YC2 1186 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms