RNA–Protein interactions for RNA: ENST00000397163.7

CAPN3-206, Transcript of calpain 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CAPN3, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-206ENST00000397163 KLHL23Q8NBE8 558 aa9.79□□□□□ -0.84
CAPN3-206ENST00000397163 ZNF564Q8TBZ8 553 aaPredicted RBP9.79□□□□□ -0.84
CAPN3-206ENST00000397163 SPIRE2Q8WWL2 714 aa9.79□□□□□ -0.84
CAPN3-206ENST00000397163 LENG9Q96B70 501 aa9.79□□□□□ -0.84
CAPN3-206ENST00000397163 NUP85Q9BW27 656 aa9.79□□□□□ -0.84
CAPN3-206ENST00000397163 PITPNM3Q9BZ71 974 aa9.79□□□□□ -0.84
CAPN3-206ENST00000397163 DDX4Q9NQI0 724 aaKnown RBP9.79□□□□□ -0.84
CAPN3-206ENST00000397163 PRKAG3Q9UGI9 489 aa9.79□□□□□ -0.84
CAPN3-206ENST00000397163 GGA1Q9UJY5 639 aa9.79□□□□□ -0.84
CAPN3-206ENST00000397163 hCG_2014768A0A024R1R8 64 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 ZBTB39O15060 712 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 TTC4O95801 387 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 SHMT1P34896 483 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 SETDB1Q15047 1291 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 ODR4Q5SWX8 454 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 NSMFQ6X4W1 530 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 ECHDC2Q86YB7 292 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 FAM210AQ96ND0 272 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 POLR3CQ9BUI4 534 aaPredicted RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 TXLNGQ9NUQ3 528 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 WHRNQ9P202 907 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 RGPD3A6NKT7 1758 aaPredicted RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 RGPD4Q7Z3J3 1758 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 UNC5CO95185 931 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 HMGB2P26583 209 aaKnown RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 CNGA1P29973 690 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 ALDH3A1P30838 453 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 HOXA13P31271 388 aaPredicted RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 GCLCP48506 637 aaPredicted RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 STRN3Q13033 797 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 LRRC23Q53EV4 343 aaPredicted RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 SLFN13Q68D06 897 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 RNF43Q68DV7 783 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 ZNF720Q7Z2F6 126 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 ARHGEF19Q8IW93 802 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 SUPT20HQ8NEM7 779 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 MORC4Q8TE76 937 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 ZNF653Q96CK0 615 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 MAGEB18Q96M61 343 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 CRAMP1Q96RY5 1269 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 MOV10L1Q9BXT6 1211 aaKnown RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 VAV3Q9UKW4 847 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 EMSYQ7Z589 1322 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 APBA3O96018 575 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 IL1R1P14778 569 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 TAL1P17542 331 aaPredicted RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 RFX1P22670 979 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 SP100P23497 879 aaPredicted RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 ITGA8P53708 1063 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 GTF2IP78347 998 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 MGAT5Q09328 741 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 SIX1Q15475 284 aaPredicted RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 NFIL3Q16649 462 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 C1orf186Q6ZWK4 172 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 LMNTD2Q8IXW0 634 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 CYP4X1Q8N118 509 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 TTC8Q8TAM2 541 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 RPGRQ92834 1020 aaKnown RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 DYDC2Q96IM9 177 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 RBM41Q96IZ5 413 aaKnown RBP9.78□□□□□ -0.84
CAPN3-206ENST00000397163 PCDHB18PQ96TA0 734 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 PLVAPQ9BX97 442 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 AMNQ9BXJ7 453 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 PCIF1Q9H4Z3 704 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 LRRC19Q9H756 370 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 WDR35Q9P2L0 1181 aa9.78□□□□□ -0.84
CAPN3-206ENST00000397163 CNTNAP4Q9C0A0 1308 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 GSTTP1A0A1W2PQM5 241 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 A0A1W2PRG0 241 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 RPS6KA4O75676 772 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 SGPL1O95470 568 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 HLA-DOAP06340 250 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 CCNB1P14635 433 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 ATF2P15336 505 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 GM2AP17900 193 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 ITIH2P19823 946 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 ATP2B4P23634 1241 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 SKIV2L2P42285 1042 aaKnown RBP9.77□□□□□ -0.84
CAPN3-206ENST00000397163 GCLMP48507 274 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 ERFP50548 548 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 CUL3Q13618 768 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 MTFR1Q15390 333 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 FOXB2Q5VYV0 432 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 CGB2Q6NT52 195 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 PPP1R21Q6ZMI0 780 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 C15orf52Q6ZUT6 534 aaKnown RBP9.77□□□□□ -0.84
CAPN3-206ENST00000397163 CCDC125Q86Z20 511 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 FAM81AQ8TBF8 368 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 CRYGNQ8WXF5 182 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 ATG4AQ8WYN0 398 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 KAT5Q92993 513 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 CD101Q93033 1021 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 UTP4Q969X6 686 aaKnown RBP9.77□□□□□ -0.84
CAPN3-206ENST00000397163 ERP27Q96DN0 273 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 SNF8Q96H20 258 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 PWWP2AQ96N64 755 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 DMAC2Q9NW81 257 aa9.77□□□□□ -0.84
CAPN3-206ENST00000397163 CHCHD3Q9NX63 227 aaKnown RBP9.77□□□□□ -0.84
CAPN3-206ENST00000397163 KIF13BQ9NQT8 1826 aa9.77□□□□□ -0.85
CAPN3-206ENST00000397163 LIN7AO14910 233 aaPredicted RBP9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms