RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 APPL2Q8NEU8 664 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 PALLDQ8WX93 1383 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 DDX28Q9NUL7 540 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 KCNN4O15554 427 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 PMS1P54277 932 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 ZNF211Q13398 564 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 CENPPQ6IPU0 288 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 C16orf89Q6UX73 402 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 SPATA16Q9BXB7 569 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 ATP9BO43861 1147 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 PSMA3P25788 255 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 RAD23BP54727 409 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 MRPS15P82914 257 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 SUSD4Q5VX71 490 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 STAMBPL1Q96FJ0 436 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 TRPC7Q9HCX4 862 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 EHD2Q9NZN4 543 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 C21orf2O43822 256 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 GUCA1CO95843 209 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 SERPIND1P05546 499 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 NFRKBQ6P4R8 1299 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 RFFLQ8WZ73 363 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 CHAMP1Q96JM3 812 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 EIF2AK1Q9BQI3 630 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 MRPL1Q9BYD6 325 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 NSMCE4AQ9NXX6 385 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 PSD3Q9NYI0 1048 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 NEO1Q92859 1461 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 RASSF10A6NK89 507 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 C3orf70A6NLC5 250 aaPredicted RBP13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 TCF3P15923 654 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 VCAM1P19320 739 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 MRPS25P82663 173 aaKnown RBP13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 NECTIN1Q15223 517 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 ETNK1Q9HBU6 452 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 TUFT1Q9NNX1 390 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 MLXIPLQ9NP71 852 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 BARHL2Q9NY43 387 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 IMPDH2P12268 514 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 STILQ15468 1287 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 ATF5Q9Y2D1 282 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP11P51784 963 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 ADGRF4Q8IZF3 695 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 CEP95Q96GE4 821 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 ARHGEF5Q12774 1597 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 RALBP11234 206 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 CAPZA2P47755 286 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 KIAA2013Q8IYS2 634 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 TADA1Q96BN2 335 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 CMTM5Q96DZ9 223 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 MROH7-TTC4A0A0A0MT08 1334 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 ORC4O43929 436 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 P3H1Q32P28 736 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 MED15Q96RN5 788 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 RGL1Q9NZL6 768 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 BLOC1S6Q9UL45 172 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 UGGT1Q9NYU2 1555 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 POTEFA5A3E0 1075 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 LRRIQ3A6PVS8 624 aaPredicted RBP13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 POTEIP0CG38 1075 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 ALDH18A1P54886 795 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 ACTR2P61160 394 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 UGP2Q16851 508 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 POTEGQ6S5H5 508 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 POTEEQ6S8J3 1075 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 ATPAF2Q8N5M1 289 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 OSBPL1AQ9BXW6 950 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 DOLKQ9UPQ8 538 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L15C9J2P7 530 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L13C9JLJ4 530 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L11C9JVI0 530 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L18D6R9N7 530 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L22D6RA61 530 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L17D6RBQ6 530 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L19D6RCP7 530 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L20D6RJB6 530 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 UBXN8O00124 270 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L24Q0WX57 530 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 USP17L6PQ6QN14 398 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 PRUNE1Q86TP1 453 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 KRT35Q92764 455 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 ATXN7L3BQ96GX2 97 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 SMG5Q9UPR3 1016 aaKnown RBP13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 EMSYQ7Z589 1322 aa13.47□□□□□ -0.25
CCDC88C-204ENST00000389857 LAMC1P11047 1609 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 PGM1P36871 562 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 PPP3CCP48454 512 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 NLRP11P59045 1033 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 E2F4Q16254 413 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 ZNF507Q8TCN5 953 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 AGPAT1Q99943 283 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 NPHP4O75161 1426 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 PLEKHA8Q96JA3 519 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 ELMO2Q96JJ3 720 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 YIPF3Q9GZM5 350 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 SRP68Q9UHB9 627 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 CDK12Q9NYV4 1490 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 SLC16A3O15427 465 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 MMP10P09238 476 aa13.46□□□□□ -0.25
CCDC88C-204ENST00000389857 ATL2Q8NHH9 583 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms