RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PIGKQ92643 395 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CIDECQ96AQ7 238 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF285Q96NJ3 590 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 IGFLR1Q9H665 355 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 PRMT8Q9NR22 394 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 IL1RAPL1Q9NZN1 696 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 XPO7Q9UIA9 1087 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 NOVA2Q9UNW9 492 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 AGAP1Q9UPQ3 857 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 A0A1W2PRG6 482 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 DFFAO00273 331 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 TBC1D4O60343 1298 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 MOCS2O96007 188 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 WEE1P30291 646 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 KLHL30Q0D2K2 578 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 SCGB2A2Q13296 93 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 RIN1Q13671 783 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 ZKSCAN8Q15776 578 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 NDUFA5Q16718 116 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 KRT26Q7Z3Y9 468 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 GATAD2BQ8WXI9 593 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 OMA1Q96E52 524 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 SUCLG2Q96I99 432 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 RADILQ96JH8 1075 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 MNTQ99583 582 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 USP44Q9H0E7 712 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 KLHL8Q9P2G9 620 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 KBTBD13C9JR72 458 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 IDH3BO43837 385 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 SASH1O94885 1247 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 RAB2AP61019 212 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 DDX39BQ13838 428 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 FAM133BQ5BKY9 247 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 SLC9C2Q5TAH2 1124 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CDH24Q86UP0 819 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 JAMLQ86YT9 394 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 ULK2Q8IYT8 1036 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CCDC24Q8N4L8 307 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 IQUBQ8NA54 791 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 HAUS4Q9H6D7 363 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CAB39LQ9H9S4 337 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CA5BQ9Y2D0 317 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 ZBTB1Q9Y2K1 713 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 PKP3Q9Y446 797 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 PRKAB1Q9Y478 270 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 TTLL13PA6NNM8 815 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 FAM25EA8MYX2 175 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 DNTTP04053 509 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 MSX1P28360 303 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CHI3L1P36222 383 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 NME3Q13232 169 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 NEK5Q6P3R8 708 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 OR5T3Q8NGG3 340 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 AGR3Q8TD06 166 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 MRPL48Q96GC5 212 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 MKNK1Q9BUB5 465 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 LSM14BQ9BX40 385 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 AVENQ9NQS1 362 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 NRBP2Q9NSY0 501 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 FKBP14Q9NWM8 211 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 MAD2L2Q9UI95 211 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 GMFGO60234 142 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 OAS2P29728 719 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 GRB14Q14449 540 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 TMED2Q15363 201 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 NDUFAF6Q330K2 333 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 LRRC24Q50LG9 513 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 LRRC71Q8N4P6 559 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 TRPV3Q8NET8 790 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 OR6B3Q8NGW1 331 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 PKD2L2Q9NZM6 624 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 ZNF624Q9P2J8 865 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 XPR1Q9UBH6 696 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 FAM83GA6ND36 823 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 ECE2O60344 883 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 RNASEH1O60930 286 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 MMEP08473 750 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 SKIV2L2P42285 1042 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 ADCY2Q08462 1091 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 NAA35Q5VZE5 725 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 PADI6Q6TGC4 694 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CHRDL2Q6WN34 429 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 GALNTL5Q7Z4T8 443 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 MCEMP1Q8IX19 187 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 SUPT20HQ8NEM7 779 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 FAM172AQ8WUF8 416 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 AP1M1Q9BXS5 423 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 FRMD8Q9BZ67 464 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 UBE2OQ9C0C9 1292 aaKnown RBP4.88□□□□□ -1.63
SCN1A-202ENST00000375405 C8orf4Q9NR00 106 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 WDR35Q9P2L0 1181 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 FHOD1Q9Y613 1164 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 CNTRLQ7Z7A1 2325 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 NAIPQ13075 1403 aa4.88□□□□□ -1.63
SCN1A-202ENST00000375405 C2orf71A6NGG8 1288 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 CFAP99D6REC4 459 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 KRIT1O00522 736 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 PRPSAP2O60256 369 aa4.87□□□□□ -1.63
SCN1A-202ENST00000375405 AFPP02771 609 aaKnown RBP4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms