RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CASTOR2A6NHX0 329 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 VSTM5A8MXK1 200 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 DDX5P17844 614 aaKnown RBP8.96□□□□□ -0.97
HMGB1-203ENST00000341423 RASA1P20936 1047 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 SEL1L2Q5TEA6 688 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 ATF7IP2Q5U623 682 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 FBXL19Q6PCT2 694 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 BZW1Q7L1Q6 419 aaKnown RBP8.96□□□□□ -0.97
HMGB1-203ENST00000341423 TXNRD3Q86VQ6 643 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 TTC8Q8TAM2 541 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 HMGB4Q8WW32 186 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 TAAR1Q96RJ0 339 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 PLA2G12BQ9BX93 195 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 SMPD4Q9NXE4 827 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 PSMD12O00232 456 aaPredicted RBP8.96□□□□□ -0.97
HMGB1-203ENST00000341423 FGAP02671 866 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 CD52P31358 61 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 ACAP2Q15057 778 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D25Q3MII6 688 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 MFSD5Q6N075 450 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 RETSATQ6NUM9 610 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 CATSPER3Q86XQ3 398 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 TMEM192Q8IY95 271 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 STAG2Q8N3U4 1231 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 CCDC51Q96ER9 411 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 UROC1Q96N76 676 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 IDI2Q9BXS1 227 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 HDAC6Q9UBN7 1215 aa8.96□□□□□ -0.97
HMGB1-203ENST00000341423 ARMCX3Q9UH62 379 aaPredicted RBP8.96□□□□□ -0.97
HMGB1-203ENST00000341423 BCL9O00512 1426 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 TMEM247A6NEH6 219 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 CHKAP35790 457 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 CXCL12P48061 93 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 ITIH3Q06033 890 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 DUSP28Q4G0W2 176 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 SLC39A5Q6ZMH5 540 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 ADGRF4Q8IZF3 695 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 AOPEPQ8N6M6 819 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 HELQQ8TDG4 1101 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.96□□□□□ -0.98
HMGB1-203ENST00000341423 SPATA17Q96L03 361 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 CPED1A4D0V7 1026 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 KATNA1O75449 491 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 HSD17B4P51659 736 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 FOXC1Q12948 553 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 FAM26FQ5R3K3 315 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 TLR8Q9NR97 1041 aaKnown RBP8.96□□□□□ -0.98
HMGB1-203ENST00000341423 PCDHA4Q9UN74 947 aa8.96□□□□□ -0.98
HMGB1-203ENST00000341423 F5H5T6 163 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 KIAA0391O15091 583 aaKnown RBP8.95□□□□□ -0.98
HMGB1-203ENST00000341423 ATP6V1E1P36543 226 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 GJA8P48165 433 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 CARNMT1Q8N4J0 409 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 KREMEN2Q8NCW0 462 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 PHOSPHO2Q8TCD6 241 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 DYDC1Q8WWB3 177 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 MRIQ9BWK5 157 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 EHD4Q9H223 541 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 TRIM45Q9H8W5 580 aaPredicted RBP8.95□□□□□ -0.98
HMGB1-203ENST00000341423 PIH1D3Q9NQM4 214 aaKnown RBP8.95□□□□□ -0.98
HMGB1-203ENST00000341423 IQGAP1P46940 1657 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 GFRA3O60609 400 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 SERPIND1P05546 499 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 BLKP51451 505 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 CLCN3P51790 818 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 MAGEB5Q9BZ81 275 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 NFU1Q9UMS0 254 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 PREX2Q70Z35 1606 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 USP27XA6NNY8 438 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 RHPN2P1A8MT19 583 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 GOLGA8SH3BPF8 625 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 RTN3O95197 1032 aaPredicted RBP8.95□□□□□ -0.98
HMGB1-203ENST00000341423 SLC2A4P14672 509 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 MTA1Q13330 715 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 EMC2Q15006 297 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 EPHA7Q15375 998 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 C12orf60Q5U649 245 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 CEP112Q8N8E3 955 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 TMEM143Q96AN5 459 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 MEIS1O00470 390 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 CCL16O15467 120 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 IL18RAPO95256 599 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 IFNA8P32881 189 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 CYLC1P35663 651 aaPredicted RBP8.95□□□□□ -0.98
HMGB1-203ENST00000341423 ACTR2P61160 394 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 TOMM20Q15388 145 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 ZNF410Q86VK4 478 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 CSGALNACT2Q8N6G5 542 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 SYTL5Q8TDW5 730 aaPredicted RBP8.95□□□□□ -0.98
HMGB1-203ENST00000341423 TESK2Q96S53 571 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 SENP1Q9P0U3 644 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 CTTNBP2NLQ9P2B4 639 aa8.95□□□□□ -0.98
HMGB1-203ENST00000341423 PRPSAP2O60256 369 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 VTNP04004 478 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 DDIT3P35638 169 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 MARSP56192 900 aaKnown RBP8.94□□□□□ -0.98
HMGB1-203ENST00000341423 TWF1Q12792 350 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 RCN2Q14257 317 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 CAMKK1Q8N5S9 505 aa8.94□□□□□ -0.98
HMGB1-203ENST00000341423 TTPALQ9BTX7 342 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms