RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 IGF2BP3O00425 579 aaKnown RBP eCLIP20.41■□□□□ 0.866e-8■■□□□ 13.7
RTN4-201ENST00000317610 GRIN3BO60391 1043 aa20.41■□□□□ 0.86
RTN4-201ENST00000317610 ASRGL1Q7L266 308 aa20.41■□□□□ 0.86
RTN4-201ENST00000317610 GRK7Q8WTQ7 553 aa20.41■□□□□ 0.86
RTN4-201ENST00000317610 CHST7Q9NS84 486 aa20.41■□□□□ 0.86
RTN4-201ENST00000317610 CTNNAL1Q9UBT7 734 aa20.41■□□□□ 0.86
RTN4-201ENST00000317610 MRPL11Q9Y3B7 192 aaKnown RBP20.41■□□□□ 0.86
RTN4-201ENST00000317610 GPC3P51654 580 aa20.4■□□□□ 0.86
RTN4-201ENST00000317610 ITGA8P53708 1063 aa20.4■□□□□ 0.86
RTN4-201ENST00000317610 CLNS1AP54105 237 aaKnown RBP20.4■□□□□ 0.86
RTN4-201ENST00000317610 DACT2Q5SW24 774 aa20.4■□□□□ 0.86
RTN4-201ENST00000317610 STRIP1Q5VSL9 837 aa20.4■□□□□ 0.86
RTN4-201ENST00000317610 NSMFQ6X4W1 530 aa20.4■□□□□ 0.86
RTN4-201ENST00000317610 MXRA8Q9BRK3 442 aa20.4■□□□□ 0.86
RTN4-201ENST00000317610 NINJ2Q9NZG7 142 aa20.4■□□□□ 0.86
RTN4-201ENST00000317610 GGT7Q9UJ14 662 aa20.4■□□□□ 0.86
RTN4-201ENST00000317610 ENTPD3O75355 529 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 P4HBP07237 508 aaKnown RBP20.39■□□□□ 0.86
RTN4-201ENST00000317610 BRAFP15056 766 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 NPR1P16066 1061 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 GBP2P32456 591 aaPredicted RBP20.39■□□□□ 0.86
RTN4-201ENST00000317610 RBM5P52756 815 aaKnown RBP eCLIP20.39■□□□□ 0.86
RTN4-201ENST00000317610 RNF43Q68DV7 783 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 MAEAQ7L5Y9 396 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 HAUS6Q7Z4H7 955 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 RELL1Q8IUW5 271 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 KLHL29Q96CT2 875 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 RSRC1Q96IZ7 334 aaKnown RBP20.39■□□□□ 0.86
RTN4-201ENST00000317610 IFT74Q96LB3 600 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 MAGEB18Q96M61 343 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 TRAIPQ9BWF2 469 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 DCLK3Q9C098 648 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 DBNDD1Q9H9R9 158 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 NEU2Q9Y3R4 380 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 ACTL7BQ9Y614 415 aa20.39■□□□□ 0.86
RTN4-201ENST00000317610 SCN9AQ15858 1988 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 ANP32DO95626 131 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 PDE6BP35913 854 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 SKIV2L2P42285 1042 aaKnown RBP20.39■□□□□ 0.85
RTN4-201ENST00000317610 RARRES1P49788 294 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 MAP2K1Q02750 393 aaPredicted RBP20.39■□□□□ 0.85
RTN4-201ENST00000317610 MYO1EQ12965 1108 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 SNX1Q13596 522 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 KYNUQ16719 465 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 CGB2Q6NT52 195 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 CCDC174Q6PII3 467 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 MIER3Q7Z3K6 550 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 FITM2Q8N6M3 262 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 ANKRD42Q8N9B4 389 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 NSMCE1Q8WV22 266 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 KCNK9Q9NPC2 374 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 SERPINA10Q9UK55 444 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 LTBP4Q8N2S1 1624 aa20.39■□□□□ 0.85
RTN4-201ENST00000317610 GAS8O95995 478 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 POTEJP0CG39 1038 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 CCND1P24385 295 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 ECE1P42892 770 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 CCDC15Q0P6D6 951 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 ACVR2BQ13705 512 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 CLEC16AQ2KHT3 1053 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 KRT39Q6A163 491 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 IWS1Q96ST2 819 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 DEFB129Q9H1M3 183 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 AVENQ9NQS1 362 aaPredicted RBP20.38■□□□□ 0.85
RTN4-201ENST00000317610 EURLQ9NYK6 297 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 NOP53Q9NZM5 478 aaKnown RBP20.38■□□□□ 0.85
RTN4-201ENST00000317610 L3MBTL1Q9Y468 752 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 THAP12O43422 761 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 LYPLA2O95372 231 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 GH1P01241 217 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 CCNB1P14635 433 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 ATF2P15336 505 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 SCP2P22307 547 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 ARHGEF18Q6ZSZ5 1173 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 CYP4X1Q8N118 509 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 KIFAP3Q92845 792 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 FAM212AQ96EL1 285 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 TGS1Q96RS0 853 aaKnown RBP20.38■□□□□ 0.85
RTN4-201ENST00000317610 HERPUD2Q9BSE4 406 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 ARHGEF10LQ9HCE6 1279 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 TMEM8AQ9HCN3 771 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 TMX2Q9Y320 296 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 ZHX2Q9Y6X8 837 aa20.38■□□□□ 0.85
RTN4-201ENST00000317610 KRT16P08779 473 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 RPSAP08865 295 aaKnown RBP20.37■□□□□ 0.85
RTN4-201ENST00000317610 ITGB5P18084 799 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 MAPK4P31152 587 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 SLC1A1P43005 524 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 NCKAP1LP55160 1127 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 CENPCQ03188 943 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 MTFR1Q15390 333 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.37■□□□□ 0.853e-7■□□□□ 8.1
RTN4-201ENST00000317610 ATL2Q8NHH9 583 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 ATG4AQ8WYN0 398 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 GRAMD1AQ96CP6 724 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 TIPINQ9BVW5 301 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 ANAPC5Q9UJX4 755 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 PNMA3Q9UL41 463 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 CDH16O75309 829 aa20.37■□□□□ 0.85
RTN4-201ENST00000317610 CETPP11597 493 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms