RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Morc4Q8BMD7 928 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Alg1Q921Q3 482 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Utp11Q9CZJ1 253 aaKnown RBP16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Rabgap1A2AWA9 1064 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Efna5O08543 228 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Mybl1P51960 751 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Nell2Q61220 819 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Elmo3Q8BYZ7 720 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Actl9Q8CG27 415 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Snapc2Q91XA5 359 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Ccdc70Q9D9B0 223 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Dnajc12Q9R022 198 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 March10E9PX79 788 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Gm5795E9PZN8 263 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 PhkbQ7TSH2 1085 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Rhot1Q8BG51 631 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 FignQ9ERZ6 759 aa16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Dkc1Q9ESX5 509 aaKnown RBP16.47■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Xbp1O35426 267 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Tdpoz4Q6YCH2 370 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Nudt5Q9JKX6 218 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Tjp2Q9Z0U1 1167 aaKnown RBP16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Krt27Q9Z320 448 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Znf609Q8BZ47 1413 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 XdhQ00519 1335 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Gm29133A0A1B0GT72 266 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Rps12P63323 132 aaKnown RBP16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Mylk3Q3UIZ8 795 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Ppfia2Q8BSS9 1257 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Lig4Q8BTF7 911 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 DnerQ8JZM4 737 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Dusp19Q8K4T5 220 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 GzmnQ920S1 248 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Fam111aQ9D2L9 613 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Mrc1Q61830 1456 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Olfr67F8VPJ8 320 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Fam167bP17257 162 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 NfibP97863 570 aaKnown RBP16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Ifnl2Q4VK74 193 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Ddx42Q810A7 929 aaKnown RBP16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 A430089I19RikQ8C9W1 407 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Pcdhgc5Q91XW9 944 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Catsper1Q91ZR5 686 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Rmi1Q9D4G9 616 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Abcg8Q9DBM0 673 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 Ubiad1Q9DC60 336 aa16.46■□□□□ 0.23
Ccdc88b-201ENSMUST00000113440 1700017N19RikA0A087WPJ1 469 aa16.46■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Lig1P37913 916 aa16.46■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Hsd17b1P51656 344 aa16.46■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Rnpc3Q3UZ01 514 aaKnown RBP16.46■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ano5Q75UR0 904 aa16.46■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tmem117Q8BH18 514 aa16.46■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Dnajc3Q91YW3 504 aa16.46■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Dnajc19Q9CQV7 116 aa16.46■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Apol8A2VDH7 339 aaKnown RBP16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 UrosP51163 265 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Arhgap44Q5SSM3 814 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Dqx1Q924H9 718 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Abcg3Q99P81 650 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Scgb2b20Q9JI02 112 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Pdcd7Q9WTY1 482 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 NalcnQ8BXR5 1738 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ripor3A1L3T7 938 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Vti1aO89116 217 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Sult1d1Q3UZZ6 295 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Serpinb6Q60854 378 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 GmipQ6PGG2 971 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Alas1Q8VC19 642 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Doc2gQ9ESN1 387 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Osbpl7A2A716 963 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 ProcP33587 460 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Lgr6Q3UVD5 967 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Krt35Q497I4 455 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Trim17Q7TPM3 477 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Fam53cQ8BXQ8 393 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ppp1r3gQ9CW07 347 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 1700018B08RikQ9DA83 213 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Zfp266E9Q2S7 604 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 AoahO35298 574 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Hsph1Q61699 858 aaKnown RBP16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Baiap3Q80TT2 1134 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Slc38a7Q8BWH0 463 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Q8R1Y2 203 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Sgms1Q8VCQ6 419 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tmco4Q91WU4 631 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 BrdtQ91Y44 956 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Anapc7Q9WVM3 565 aa16.45■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tnip3A0A1D5RMN0 279 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Trappc3lQ4KL14 181 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Kcnj11Q61743 390 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gja3Q64448 417 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Raver2Q7TPD6 673 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Pum3Q8BKS9 647 aaKnown RBP16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Gcfc2Q8BKT3 769 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Fra10ac1Q8BP78 315 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 NelfcdQ922L6 591 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Taf1dQ9D4V4 322 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Tmx2Q9D710 295 aaKnown RBP16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 ThegQ9JMB1 375 aa16.44■□□□□ 0.22
Ccdc88b-201ENSMUST00000113440 Ggps1Q9WTN0 300 aa16.44■□□□□ 0.22
Retrieved 100 of 22,080 RNA–protein pairs in 18.8 ms