RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	YHR035W	P38769	630 aa		4.7	□□□□□ -1.66
UBP9	YER098W	MNL1	P38888	796 aa		4.7	□□□□□ -1.66
UBP9	YER098W	MEP2	P41948	499 aa		4.7	□□□□□ -1.66
UBP9	YER098W	AGX1	P43567	385 aa		4.7	□□□□□ -1.66
UBP9	YER098W	YHC3	P47040	408 aa		4.7	□□□□□ -1.66
UBP9	YER098W	GTO1	P48239	356 aa		4.7	□□□□□ -1.66
UBP9	YER098W	RPL4B	P49626	362 aa	Known RBP	4.7	□□□□□ -1.66
UBP9	YER098W	GOT1	Q03554	138 aa		4.7	□□□□□ -1.66
UBP9	YER098W	YMR087W	Q04299	284 aa		4.7	□□□□□ -1.66
UBP9	YER098W	MRPL35	Q06678	367 aa		4.7	□□□□□ -1.66
UBP9	YER098W	POS5	Q06892	414 aa		4.7	□□□□□ -1.66
UBP9	YER098W	YOL019W	Q08157	551 aa		4.7	□□□□□ -1.66
UBP9	YER098W	MCH4	Q08268	501 aa		4.7	□□□□□ -1.66
UBP9	YER098W	NDJ1	Q12366	352 aa		4.7	□□□□□ -1.66
UBP9	YER098W	LAA1	P39526	2014 aa		4.69	□□□□□ -1.66
UBP9	YER098W	CDC28	P00546	298 aa	Known RBP	4.69	□□□□□ -1.66
UBP9	YER098W	SIR2	P06700	562 aa		4.69	□□□□□ -1.66
UBP9	YER098W	GAL7	P08431	366 aa		4.69	□□□□□ -1.66
UBP9	YER098W	ERD1	P16151	362 aa		4.69	□□□□□ -1.66
UBP9	YER098W	SNF6	P18888	332 aa		4.69	□□□□□ -1.66
UBP9	YER098W	BUB3	P26449	341 aa		4.69	□□□□□ -1.66
UBP9	YER098W	SUI1	P32911	108 aa	Known RBP	4.69	□□□□□ -1.66
UBP9	YER098W	SFC1	P33303	322 aa		4.69	□□□□□ -1.66
UBP9	YER098W	TVP38	P36164	337 aa		4.69	□□□□□ -1.66
UBP9	YER098W	MTC4	P38335	694 aa	Known RBP	4.69	□□□□□ -1.66
UBP9	YER098W	HTD2	P38790	280 aa	Known RBP	4.69	□□□□□ -1.66
UBP9	YER098W	AIM10	P39965	576 aa	Known RBP	4.69	□□□□□ -1.66
UBP9	YER098W	VAB2	P40003	282 aa		4.69	□□□□□ -1.66
UBP9	YER098W	YIL060W	P40519	144 aa		4.69	□□□□□ -1.66
UBP9	YER098W	PRM10	P42946	383 aa		4.69	□□□□□ -1.66
UBP9	YER098W	AIM25	P47140	327 aa		4.69	□□□□□ -1.66
UBP9	YER098W	SMM1	P53720	384 aa	Known RBP	4.69	□□□□□ -1.66
UBP9	YER098W	RHO4	Q00246	291 aa		4.69	□□□□□ -1.66
UBP9	YER098W	SMA2	Q04658	369 aa		4.69	□□□□□ -1.66
UBP9	YER098W	ANT1	Q06497	328 aa		4.69	□□□□□ -1.66
UBP9	YER098W	SSK1	Q07084	712 aa		4.69	□□□□□ -1.66
UBP9	YER098W	YOR365C	Q08844	703 aa		4.69	□□□□□ -1.66
UBP9	YER098W	YPL245W	Q12179	454 aa	Known RBP	4.69	□□□□□ -1.66
UBP9	YER098W	TIR4	Q12218	487 aa	Predicted RBP	4.69	□□□□□ -1.66
UBP9	YER098W	MHT1	Q12525	324 aa		4.69	□□□□□ -1.66
UBP9	YER098W	PRB1	P09232	635 aa		4.69	□□□□□ -1.66
UBP9	YER098W	PET9	P18239	318 aa	Known RBP	4.69	□□□□□ -1.66
UBP9	YER098W	SUA5	P32579	426 aa		4.69	□□□□□ -1.66
UBP9	YER098W	AVT5	P38176	459 aa		4.69	□□□□□ -1.66
UBP9	YER098W	SCD6	P45978	349 aa	Known RBP RIP-Chip data	4.69	□□□□□ -1.66	RIP-Chip
UBP9	YER098W	BOL2	P53082	120 aa		4.69	□□□□□ -1.66
UBP9	YER098W	YNL146W	P53906	100 aa		4.69	□□□□□ -1.66
UBP9	YER098W	MSC3	Q05812	728 aa		4.69	□□□□□ -1.66
UBP9	YER098W	TMS1	Q12116	473 aa		4.69	□□□□□ -1.66
UBP9	YER098W	YLR046C	Q12253	270 aa		4.69	□□□□□ -1.66
UBP9	YER098W	RMD5	Q12508	421 aa		4.69	□□□□□ -1.66
UBP9	YER098W	NHP6B	P11633	99 aa	Known RBP	4.68	□□□□□ -1.66
UBP9	YER098W	FUN14	P18411	198 aa		4.68	□□□□□ -1.66
UBP9	YER098W	POF1	P25576	258 aa		4.68	□□□□□ -1.66
UBP9	YER098W	OAC1	P32332	324 aa		4.68	□□□□□ -1.66
UBP9	YER098W	YPT52	P36018	234 aa	Known RBP	4.68	□□□□□ -1.66
UBP9	YER098W	YBR063C	P38083	404 aa		4.68	□□□□□ -1.66
UBP9	YER098W	MAL32	P38158	584 aa		4.68	□□□□□ -1.66
UBP9	YER098W	BMT2	P38278	337 aa		4.68	□□□□□ -1.66
UBP9	YER098W	POP7	P38291	140 aa		4.68	□□□□□ -1.66
UBP9	YER098W	PEX32	P38292	413 aa		4.68	□□□□□ -1.66
UBP9	YER098W	GPI16	P38875	610 aa		4.68	□□□□□ -1.66
UBP9	YER098W	ALP1	P38971	573 aa		4.68	□□□□□ -1.66
UBP9	YER098W	YEL028W	P39989	153 aa		4.68	□□□□□ -1.66
UBP9	YER098W	VMA21	P41806	77 aa		4.68	□□□□□ -1.66
UBP9	YER098W	SDT1	P53078	280 aa		4.68	□□□□□ -1.66
UBP9	YER098W	RPN14	P53196	417 aa		4.68	□□□□□ -1.66
UBP9	YER098W	MAL12	P53341	584 aa		4.68	□□□□□ -1.66
UBP9	YER098W	ATG41	Q12048	136 aa		4.68	□□□□□ -1.66
UBP9	YER098W	UNG1	P12887	359 aa		4.67	□□□□□ -1.66
UBP9	YER098W	ERD2	P18414	219 aa		4.67	□□□□□ -1.66
UBP9	YER098W	YPK2	P18961	677 aa		4.67	□□□□□ -1.66
UBP9	YER098W	AAT2	P23542	418 aa	Known RBP	4.67	□□□□□ -1.66
UBP9	YER098W	KRE6	P32486	720 aa		4.67	□□□□□ -1.66
UBP9	YER098W	EFM1	P38732	585 aa		4.67	□□□□□ -1.66
UBP9	YER098W	SWM2	P40342	146 aa		4.67	□□□□□ -1.66
UBP9	YER098W	AYR1	P40471	297 aa		4.67	□□□□□ -1.66
UBP9	YER098W	GAB1	P41733	394 aa		4.67	□□□□□ -1.66
UBP9	YER098W	PMT4	P46971	762 aa		4.67	□□□□□ -1.66
UBP9	YER098W	DAN1	P47178	298 aa		4.67	□□□□□ -1.66
UBP9	YER098W	ASI3	P53983	676 aa		4.67	□□□□□ -1.66
UBP9	YER098W	MRPS17	Q03246	237 aa	Predicted RBP	4.67	□□□□□ -1.66
UBP9	YER098W	EKI1	Q03764	534 aa		4.67	□□□□□ -1.66
UBP9	YER098W	TMN2	Q04562	672 aa		4.67	□□□□□ -1.66
UBP9	YER098W	DCR2	Q05924	578 aa		4.67	□□□□□ -1.66
UBP9	YER098W	YLR173W	Q06247	608 aa		4.67	□□□□□ -1.66
UBP9	YER098W	MES1	P00958	751 aa	Known RBP	4.67	□□□□□ -1.66
UBP9	YER098W	MIR1	P23641	311 aa	Known RBP	4.67	□□□□□ -1.66
UBP9	YER098W	RSA4	P25382	515 aa	Known RBP	4.67	□□□□□ -1.66
UBP9	YER098W	YCR099C	P25657	155 aa		4.67	□□□□□ -1.66
UBP9	YER098W	SOR1	P35497	357 aa	Known RBP	4.67	□□□□□ -1.66
UBP9	YER098W	OAR1	P35731	278 aa		4.67	□□□□□ -1.66
UBP9	YER098W	MRP21	P38175	177 aa		4.67	□□□□□ -1.66
UBP9	YER098W	DHH1	P39517	506 aa	Known RBP	4.67	□□□□□ -1.66
UBP9	YER098W	GCV3	P39726	170 aa	Predicted RBP	4.67	□□□□□ -1.66
UBP9	YER098W	FAU1	P40099	211 aa		4.67	□□□□□ -1.66
UBP9	YER098W	POP1	P41812	875 aa		4.67	□□□□□ -1.66
UBP9	YER098W	IDP2	P41939	412 aa		4.67	□□□□□ -1.66
UBP9	YER098W	SWC4	P53201	476 aa		4.67	□□□□□ -1.66
UBP9	YER098W	VOA1	P53262	265 aa		4.67	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms