RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	ADSL	P30566	484 aa	Predicted RBP	4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	IARS	P41252	1262 aa	Known RBP	4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	PER3	P56645	1201 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	ANAPC15	P60006	121 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	IGBP1	P78318	339 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	RRP12	Q5JTH9	1297 aa	Known RBP	4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	MFSD14B	Q5SR56	506 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	TMEM240	Q5SV17	173 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	PRAMEF14	Q5SWL7	426 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	EFCAB12	Q6NXP0	572 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	RPUSD2	Q8IZ73	545 aa	Known RBP	4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	PQLC1	Q8N2U9	271 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	C7orf25	Q9BPX7	421 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	NDC1	Q9BTX1	674 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	KCNH6	Q9H252	994 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	VPS11	Q9H270	941 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	TMEM140	Q9NV12	185 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	SIK3	Q9Y2K2	1263 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	PCDHGA9	Q9Y5G4	932 aa	Known RBP	4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	PCDHGA8	Q9Y5G5	932 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	PCDHGA7	Q9Y5G6	932 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	PCDHGA6	Q9Y5G7	932 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	PCDHGA3	Q9Y5H0	932 aa		4.07	□□□□□ -1.76
CNOT1-223	ENST00000628857	hCG_2014768	A0A024R1R8	64 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	CYR61	O00622	381 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	AMH	P03971	560 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	MYBL2	P10244	700 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	VCAM1	P19320	739 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	TACR2	P21452	398 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	PTPN7	P35236	360 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	ACVRL1	P37023	503 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	RECQL	P46063	649 aa	Predicted RBP	4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	ZXDA	P98168	799 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	TUBA3C	Q13748	450 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	SEPT2	Q15019	361 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	NOMO1	Q15155	1222 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	CLUL1	Q15846	466 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	FAM214A	Q32MH5	1076 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	BRDT	Q58F21	947 aa	Predicted RBP	4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	DACT2	Q5SW24	774 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	EFCAB2	Q5VUJ9	269 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	PPP4R3A	Q6IN85	833 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	ARMC6	Q6NXE6	501 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	TUBA3E	Q6PEY2	450 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	SEM1	Q6ZVN7	128 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	USP51	Q70EK9	711 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	DRC7	Q8IY82	874 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	AMER2	Q8N7J2	671 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	MDM1	Q8TC05	714 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	HDAC10	Q969S8	669 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	LENG9	Q96B70	501 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	MTMR8	Q96EF0	704 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	PLEKHG4B	Q96PX9	1271 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	CAMKK2	Q96RR4	588 aa		4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	CPEB1	Q9BZB8	566 aa	Known RBP	4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	CCDC8	Q9H0W5	538 aa	Predicted RBP	4.06	□□□□□ -1.76
CNOT1-223	ENST00000628857	CXorf49	A8MYA2	514 aa	Predicted RBP	4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	PTGS2	P35354	604 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	SLC6A9	P48067	706 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	CCT2	P78371	535 aa	Known RBP	4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	ATP8B2	P98198	1209 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	PURA	Q00577	322 aa	Known RBP	4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	PCBP2	Q15366	365 aa	Known RBP eCLIP	4.05	□□□□□ -1.76	1e-7	■■■■■ 32.9
CNOT1-223	ENST00000628857	ATP2B3	Q16720	1220 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	LSM12	Q3MHD2	195 aa	Known RBP	4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	MB21D1	Q8N884	522 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	TFAP2C	Q92754	450 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	COA7	Q96BR5	231 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	CHMP4C	Q96CF2	233 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	CEP95	Q96GE4	821 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	TEKT5	Q96M29	485 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	UHRF1	Q96T88	793 aa	Predicted RBP	4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	NUP88	Q99567	741 aa	Predicted RBP	4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	SLC46A2	Q9BY10	475 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	SENP6	Q9GZR1	1112 aa	Predicted RBP	4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	CALCOCO1	Q9P1Z2	691 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	TUBD1	Q9UJT1	453 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	FZD1	Q9UP38	647 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	IPP	Q9Y573	584 aa		4.05	□□□□□ -1.76
CNOT1-223	ENST00000628857	E2F8	A0AVK6	867 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	NARS	O43776	548 aa	Known RBP	4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	MT-CO1	P00395	513 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	C1S	P09871	688 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	C6	P13671	934 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	HK1	P19367	917 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	MAK	P20794	623 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	C5AR1	P21730	350 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	CCND1	P24385	295 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	AKAP5	P24588	427 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	MCM7	P33993	719 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	GDF5	P43026	501 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	EVA1C	P58658	441 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	SLC25A3	Q00325	362 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	CDC42EP1	Q00587	391 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	MTM1	Q13496	603 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	FAM50A	Q14320	339 aa	Known RBP	4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	RAB39A	Q14964	217 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	UBXN2B	Q14CS0	331 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	CSRP2	Q16527	193 aa		4.04	□□□□□ -1.76
CNOT1-223	ENST00000628857	PTPN21	Q16825	1174 aa		4.04	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms