RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 EHD2Q9NZN4 543 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 KPNA7A9QM74 516 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 ASAP2O43150 1006 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 KRT38O76015 456 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 MX2P20592 715 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 COPS2P61201 443 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 CRLF3Q8IUI8 442 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 CCDC124Q96CT7 223 aaKnown RBP12.06□□□□□ -0.48
CLIP1-219ENST00000620786 TRIM54Q9BYV2 358 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 AAASQ9NRG9 546 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 DIP2AQ14689 1571 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 ARL4DP49703 201 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 RGS7P49802 495 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 ADCY2Q08462 1091 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 LAMC2Q13753 1193 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 CAPRIN1Q14444 709 aaKnown RBP12.06□□□□□ -0.48
CLIP1-219ENST00000620786 SYTL3Q4VX76 610 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 C6orf118Q5T5N4 469 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 ATF7IP2Q5U623 682 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 OR6P1Q8NGX9 317 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 TRIM15Q9C019 465 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 MRPL46Q9H2W6 279 aaKnown RBP12.06□□□□□ -0.48
CLIP1-219ENST00000620786 SNX24Q9Y343 169 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 RRN3P2A6NIE6 340 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 NPTXRO95502 500 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 THPOP40225 353 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 PDIA5Q14554 519 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 ARHGAP15Q53QZ3 475 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 FRMD5Q7Z6J6 570 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 COL23A1Q86Y22 540 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-219ENST00000620786 MTFR1LQ9H019 292 aa12.06□□□□□ -0.48
CLIP1-219ENST00000620786 CCDC188H7C350 402 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 ZNF211Q13398 564 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-219ENST00000620786 PDE1CQ14123 709 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-219ENST00000620786 RHOT1Q8IXI2 618 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 GUF1Q8N442 669 aaKnown RBP12.05□□□□□ -0.48
CLIP1-219ENST00000620786 YIPF2Q9BWQ6 316 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 SPECC1L-ADORA2AF8WAN1 911 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 CYP26A1O43174 497 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 ALDH1A3P47895 512 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 EIF3BP55884 814 aaKnown RBP12.05□□□□□ -0.48
CLIP1-219ENST00000620786 NNTQ13423 1086 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 ZSCAN26Q16670 478 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 GLE1Q53GS7 698 aaKnown RBP12.05□□□□□ -0.48
CLIP1-219ENST00000620786 MXRA8Q9BRK3 442 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 CLCA2Q9UQC9 943 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 IL18RAPO95256 599 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 LRG1P02750 347 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 CSF1RP07333 972 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 CCT5P48643 541 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 TMPRSS15P98073 1019 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 PLEKHH3Q7Z736 793 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 DPF3Q92784 378 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 TSSK1BQ9BXA7 367 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 NFU1Q9UMS0 254 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 ABCA9Q8IUA7 1624 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 C2CD2LO14523 706 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 SLC16A3O15427 465 aaKnown RBP12.05□□□□□ -0.48
CLIP1-219ENST00000620786 HBP1O60381 514 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 PDHBP11177 359 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 RASA1P20936 1047 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 ARHGDIAP52565 204 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 TBCCQ15814 346 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 KLHL38Q2WGJ6 581 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 TRIM45Q9H8W5 580 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-219ENST00000620786 SYNDIG1LA6NDD5 238 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 ZNF500O60304 480 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-219ENST00000620786 SYF2O95926 243 aaKnown RBP12.05□□□□□ -0.48
CLIP1-219ENST00000620786 STMN1P16949 149 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 RRAGCQ9HB90 399 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 MADDQ8WXG6 1647 aa12.05□□□□□ -0.48
CLIP1-219ENST00000620786 TGFB2P61812 414 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 GPS1Q13098 491 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 STILQ15468 1287 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 IL31Q6EBC2 164 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 FBXO33Q7Z6M2 555 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 PPHLN1Q8NEY8 458 aaKnown RBP12.04□□□□□ -0.48
CLIP1-219ENST00000620786 ASAP3Q8TDY4 903 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 COG4Q9H9E3 785 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 PDXKO00764 312 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 TCF7P36402 384 aaPredicted RBP12.04□□□□□ -0.48
CLIP1-219ENST00000620786 MRPS25P82663 173 aaKnown RBP12.04□□□□□ -0.48
CLIP1-219ENST00000620786 PID1Q7Z2X4 250 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 RNF135Q8IUD6 432 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 PDCD7Q8N8D1 485 aaKnown RBP12.04□□□□□ -0.48
CLIP1-219ENST00000620786 MED15Q96RN5 788 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 SERPINI1Q99574 410 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 CCDC195A0A1B0GUA6 201 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 DCDC2CA8MYV0 355 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 MYO1DO94832 1006 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 STAG3L1P0CL83 205 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 CAV1Q03135 178 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 AGPAT1Q99943 283 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 REEP2Q9BRK0 252 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 TUBB6Q9BUF5 446 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 WNT8AQ9H1J5 351 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 ALDH7A1P49419 539 aaKnown RBP12.04□□□□□ -0.48
CLIP1-219ENST00000620786 NCOA4Q13772 614 aa12.04□□□□□ -0.48
CLIP1-219ENST00000620786 FAM133BQ5BKY9 247 aaKnown RBP12.04□□□□□ -0.48
CLIP1-219ENST00000620786 ACBD5Q5T8D3 534 aaPredicted RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms