RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 PP2D1A8MPX8 630 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 M0R296 226 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 C2CD2LO14523 706 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 TEX28O15482 410 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 TADA2AO75478 443 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 LIG1P18858 919 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 CDC25AP30304 524 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 CREMQ03060 361 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 DMP1Q13316 513 aaPredicted RBP17.4■□□□□ 0.38
VRK3-221ENST00000600284 HSP90AA2PQ14568 343 aaPredicted RBP17.4■□□□□ 0.38
VRK3-221ENST00000600284 ATF7IP2Q5U623 682 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 RINT1Q6NUQ1 792 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 C1orf186Q6ZWK4 172 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 ZDHHC14Q8IZN3 488 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 RHOBTB2Q9BYZ6 727 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 GPR62Q9BZJ7 368 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 POLD4Q9HCU8 107 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 CDH22Q9UJ99 828 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 TNFSF13BQ9Y275 285 aa17.4■□□□□ 0.38
VRK3-221ENST00000600284 TDRD15B5MCY1 1934 aaKnown RBP17.4■□□□□ 0.38
VRK3-221ENST00000600284 SPDYE4A6NLX3 237 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 C2CD4DB7Z1M9 353 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 PTGESO14684 152 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 SLC26A4O43511 780 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 HIP1RO75146 1068 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 RECQL4O94761 1208 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 EDN1P05305 212 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 GUCY2CP25092 1073 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 NPTX2P47972 431 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 PEX3P56589 373 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 NT5DC1Q5TFE4 455 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 EEF1DP3Q658K8 133 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 LARP1BQ659C4 914 aaKnown RBP17.39■□□□□ 0.37
VRK3-221ENST00000600284 TMC5Q6UXY8 1006 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 DAW1Q8N136 415 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 NTPCRQ9BSD7 190 aaKnown RBP17.39■□□□□ 0.37
VRK3-221ENST00000600284 KIFC3Q9BVG8 833 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 TSHZ2Q9NRE2 1034 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 KCND2Q9NZV8 630 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 ARHGAP28Q9P2N2 729 aa17.39■□□□□ 0.37
VRK3-221ENST00000600284 SF3B1O75533 1304 aaKnown RBP eCLIP17.39■□□□□ 0.373e-6■■■■■ 137.9
VRK3-221ENST00000600284 CCDC169A6NNP5 214 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 F8W810 466 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 PAPLNO95428 1278 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 GLUD1P00367 558 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 WEE2P0C1S8 567 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 NAB2Q15742 525 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 KANK3Q6NY19 840 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 ZBTB33Q86T24 672 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 UBALD2Q8IYN6 164 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 SYT2Q8N9I0 419 aaPredicted RBP17.38■□□□□ 0.37
VRK3-221ENST00000600284 TDRD5Q8NAT2 981 aaKnown RBP17.38■□□□□ 0.37
VRK3-221ENST00000600284 PBXIP1Q96AQ6 731 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 AK8Q96MA6 479 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 ACO2Q99798 780 aaKnown RBP17.38■□□□□ 0.37
VRK3-221ENST00000600284 RUSC1Q9BVN2 902 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 PLEKHA4Q9H4M7 779 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 KMT5AQ9NQR1 393 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 MAN1C1Q9NR34 630 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 USP20Q9Y2K6 914 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 TECTAO75443 2155 aa17.38■□□□□ 0.37
VRK3-221ENST00000600284 VWA3AA6NCI4 1184 aa17.37■□□□□ 0.37
VRK3-221ENST00000600284 BMP15O95972 392 aa17.37■□□□□ 0.37
VRK3-221ENST00000600284 SP100P23497 879 aaPredicted RBP17.37■□□□□ 0.37
VRK3-221ENST00000600284 ELAVL2Q12926 359 aaKnown RBP17.37■□□□□ 0.37
VRK3-221ENST00000600284 MAPK7Q13164 816 aa17.37■□□□□ 0.37
VRK3-221ENST00000600284 KCNK18Q7Z418 384 aa17.37■□□□□ 0.37
VRK3-221ENST00000600284 BRAPQ7Z569 592 aa17.37■□□□□ 0.37
VRK3-221ENST00000600284 SPIRE2Q8WWL2 714 aa17.37■□□□□ 0.37
VRK3-221ENST00000600284 ACSF2Q96CM8 615 aaPredicted RBP17.37■□□□□ 0.37
VRK3-221ENST00000600284 MRPL4Q9BYD3 311 aaKnown RBP17.37■□□□□ 0.37
VRK3-221ENST00000600284 PTPRHQ9HD43 1115 aa17.37■□□□□ 0.37
VRK3-221ENST00000600284 SORCS3Q9UPU3 1222 aa17.37■□□□□ 0.37
VRK3-221ENST00000600284 GDAQ9Y2T3 454 aa17.37■□□□□ 0.37
VRK3-221ENST00000600284 GRM5P41594 1212 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 SMTNP53814 917 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 MTMR3Q13615 1198 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 PDXDC1Q6P996 788 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 LILRA6Q6PI73 481 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 CCDC149Q6ZUS6 474 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 OTOP3Q7RTS5 596 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 KREMEN2Q8NCW0 462 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 RIN2Q8WYP3 895 aaPredicted RBP17.36■□□□□ 0.37
VRK3-221ENST00000600284 ASIC4Q96FT7 647 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 CDK5RAP3Q96JB5 506 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 UROC1Q96N76 676 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 PNMA5Q96PV4 448 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 PAAF1Q9BRP4 392 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 TTPALQ9BTX7 342 aa17.36■□□□□ 0.37
VRK3-221ENST00000600284 TOPORSQ9NS56 1045 aaPredicted RBP17.36■□□□□ 0.37
VRK3-221ENST00000600284 CCDC195A0A1B0GUA6 201 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 CASTOR2A6NHX0 329 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 TMEM189-UBE2V1I3L0A0 370 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 TGM5O43548 720 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 BRD1O95696 1058 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 PLS3P13797 630 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 YARSP54577 528 aaKnown RBP17.35■□□□□ 0.37
VRK3-221ENST00000600284 CUL4AQ13619 759 aa17.35■□□□□ 0.37
VRK3-221ENST00000600284 ZRSR1Q15695 479 aaKnown RBP17.35■□□□□ 0.37
VRK3-221ENST00000600284 TMEM119Q4V9L6 283 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms