RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 GPBP1Q86WP2 473 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 TCHPQ9BT92 498 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 HERC2P3Q9BVR0 1158 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 APOL5Q9BWW9 433 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 PHF7Q9BWX1 381 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-203ENST00000593582 ZSCAN16Q9H4T2 348 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-203ENST00000593582 DZANK1Q9NVP4 752 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 LARSQ9P2J5 1176 aaKnown RBP16.77■□□□□ 0.28
TRIM28-203ENST00000593582 ADAM28Q9UKQ2 775 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 ODF2LQ9ULJ1 636 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 MTMR6Q9Y217 621 aa16.77■□□□□ 0.28
TRIM28-203ENST00000593582 NPHP3-ACAD11A0A0J9YXS1 232 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 F8W810 466 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 H0YCG3 227 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 PTGESO14684 152 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 LILRB3O75022 631 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 TADA2AO75478 443 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 CNPP09543 421 aaKnown RBP16.76■□□□□ 0.27
TRIM28-203ENST00000593582 MARCKSP29966 332 aaPredicted RBP16.76■□□□□ 0.27
TRIM28-203ENST00000593582 GLUD2P49448 558 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 CEBPZQ03701 1054 aaKnown RBP16.76■□□□□ 0.27
TRIM28-203ENST00000593582 ITIH3Q06033 890 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 DHX8Q14562 1220 aaKnown RBP16.76■□□□□ 0.27
TRIM28-203ENST00000593582 HSP90AA2PQ14568 343 aaPredicted RBP16.76■□□□□ 0.27
TRIM28-203ENST00000593582 PTPAQ15257 358 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 ARSHQ5FYA8 562 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 FAM173BQ6P4H8 233 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 TAS1R3Q7RTX0 852 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 TAS1R1Q7RTX1 841 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 HSCBQ8IWL3 235 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 TMEM161BQ8NDZ6 487 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 KLHL5Q96PQ7 755 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 TARS2Q9BW92 718 aaKnown RBP16.76■□□□□ 0.27
TRIM28-203ENST00000593582 CCSER1Q9C0I3 900 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 ADAM7Q9H2U9 754 aa16.76■□□□□ 0.27
TRIM28-203ENST00000593582 SRPRBQ9Y5M8 271 aaKnown RBP16.76■□□□□ 0.27
TRIM28-203ENST00000593582 CASTOR2A6NHX0 329 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 EFEMP2O95967 443 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 KRT18P05783 430 aaKnown RBP16.75■□□□□ 0.27
TRIM28-203ENST00000593582 HSP90AA1P07900 732 aaKnown RBP16.75■□□□□ 0.27
TRIM28-203ENST00000593582 EPCAMP16422 314 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 YARSP54577 528 aaKnown RBP16.75■□□□□ 0.27
TRIM28-203ENST00000593582 CACNB1Q02641 598 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-203ENST00000593582 USP41Q3LFD5 358 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 FUT10Q6P4F1 479 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 RNF168Q8IYW5 571 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-203ENST00000593582 SLC22A17Q8WUG5 538 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 RABGGTAQ92696 567 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 RAD54LQ92698 747 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 RPGRIP1Q96KN7 1286 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 REEP2Q9BRK0 252 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 CCDC94Q9BW85 323 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-203ENST00000593582 CDT1Q9H211 546 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 PTPRHQ9HD43 1115 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 TOPORSQ9NS56 1045 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-203ENST00000593582 CHST7Q9NS84 486 aa16.75■□□□□ 0.27
TRIM28-203ENST00000593582 FBXO2Q9UK22 296 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-203ENST00000593582 SF3B1O75533 1304 aaKnown RBP eCLIP16.74■□□□□ 0.273e-6■■■■□ 26.1
TRIM28-203ENST00000593582 SPDYE4A6NLX3 237 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 LOC730098B7Z3J9 87 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 DCXO43602 365 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 TOM1L1O75674 476 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 FAM13AO94988 1023 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 ADH1AP07327 375 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 MAPTP10636 758 aaKnown RBP16.74■□□□□ 0.27
TRIM28-203ENST00000593582 MCF2P10911 925 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 DDIT3P35638 169 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 TXLNAP40222 546 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 GRM5P41594 1212 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 CLCN4P51793 760 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 DSG1Q02413 1049 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 MCM6Q14566 821 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 SPECC1Q5M775 1068 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 KIAA0319Q5VV43 1072 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 MPZL3Q6UWV2 235 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 ZBTB33Q86T24 672 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 LRRC15Q8TF66 581 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 LARP4BQ92615 738 aaKnown RBP16.74■□□□□ 0.27
TRIM28-203ENST00000593582 EPSTI1Q96J88 318 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 FBXL18Q96ME1 805 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 RIPOR3Q96MK2 946 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 NECTIN4Q96NY8 510 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 PAAF1Q9BRP4 392 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 GPR62Q9BZJ7 368 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 PARVGQ9HBI0 331 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 BLOC1S4Q9NUP1 217 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 CACNG4Q9UBN1 327 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 CCDC39Q9UFE4 941 aa16.74■□□□□ 0.27
TRIM28-203ENST00000593582 TDRD15B5MCY1 1934 aaKnown RBP16.73■□□□□ 0.27
TRIM28-203ENST00000593582 BRD1O95696 1058 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 SCP2P22307 547 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 PROZP22891 400 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 OSTNP61366 133 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 NAB2Q15742 525 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 GLRA4Q5JXX5 417 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 TMEM31Q5JXX7 168 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 RARS2Q5T160 578 aaKnown RBP16.73■□□□□ 0.27
TRIM28-203ENST00000593582 ELMSAN1Q6PJG2 1045 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 ZPBP2Q6X784 338 aa16.73■□□□□ 0.27
TRIM28-203ENST00000593582 RNF135Q8IUD6 432 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms