RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 PLSCR1O15162 318 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 AMHP03971 560 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 IL2RBP14784 551 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 SP140Q13342 867 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 FOXE3Q13461 319 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 SEPT2Q15019 361 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 VPS72Q15906 364 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 C1QL3Q5VWW1 255 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 NAIF1Q69YI7 327 aaPredicted RBP8.43□□□□□ -1.06
SS18-214ENST00000580003 HTR3DQ70Z44 454 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 FBXO18Q8NFZ0 1043 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 DPF2Q92785 391 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 CYFIP2Q96F07 1278 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 CEP89Q96ST8 783 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 CPEB1Q9BZB8 566 aaKnown RBP8.43□□□□□ -1.06
SS18-214ENST00000580003 VPS11Q9H270 941 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 TMEM140Q9NV12 185 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 TUBD1Q9UJT1 453 aa8.43□□□□□ -1.06
SS18-214ENST00000580003 SNUPNO95149 360 aaKnown RBP8.42□□□□□ -1.06
SS18-214ENST00000580003 TNFRSF1AP19438 455 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 WASP42768 502 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 KIF23Q02241 960 aaPredicted RBP8.42□□□□□ -1.06
SS18-214ENST00000580003 ANKS6Q68DC2 871 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 EFCAB12Q6NXP0 572 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 MIGA2Q7L4E1 593 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 GPRIN1Q7Z2K8 1008 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 TFAP2CQ92754 450 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 ZNF341Q9BYN7 854 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 KRTAP4-7Q9BYR0 210 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 LDAHQ9H6V9 325 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 ZNF703Q9H7S9 590 aaPredicted RBP8.42□□□□□ -1.06
SS18-214ENST00000580003 POGKQ9P215 609 aa8.42□□□□□ -1.06
SS18-214ENST00000580003 PJA2O43164 708 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 SNRPA1P09661 255 aaKnown RBP8.41□□□□□ -1.06
SS18-214ENST00000580003 RAP2AP10114 183 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 MGAT1P26572 445 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 RRP12Q5JTH9 1297 aaKnown RBP8.41□□□□□ -1.06
SS18-214ENST00000580003 ZBTB46Q86UZ6 589 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 RHOT1Q8IXI2 618 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 OR2I1PQ8NGU4 316 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 ZFP28Q8NHY6 868 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 CCHCR1Q8TD31 782 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 STON2Q8WXE9 905 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 HDAC10Q969S8 669 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 FAM193BQ96PV7 902 aaPredicted RBP8.41□□□□□ -1.06
SS18-214ENST00000580003 KRTAP9-3Q9BYQ3 159 aa8.41□□□□□ -1.06
SS18-214ENST00000580003 DDX56Q9NY93 547 aaKnown RBP8.41□□□□□ -1.06
SS18-214ENST00000580003 EIF2B4Q9UI10 523 aaKnown RBP8.41□□□□□ -1.06
SS18-214ENST00000580003 AJAP1Q9UKB5 411 aaPredicted RBP8.41□□□□□ -1.06
SS18-214ENST00000580003 CXorf49A8MYA2 514 aaPredicted RBP8.4□□□□□ -1.06
SS18-214ENST00000580003 TEX33O43247 280 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 RECQL4O94761 1208 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 C1SP09871 688 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 ALOX15P16050 662 aaPredicted RBP8.4□□□□□ -1.06
SS18-214ENST00000580003 RECQLP46063 649 aaPredicted RBP8.4□□□□□ -1.06
SS18-214ENST00000580003 CLRN1P58418 232 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 BMT2Q1RMZ1 405 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 MIIPQ5JXC2 388 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 DRICH1Q6PGQ1 229 aaPredicted RBP8.4□□□□□ -1.06
SS18-214ENST00000580003 OR10H5Q8NGA6 315 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 CASKIN2Q8WXE0 1202 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 CHMP4CQ96CF2 233 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 ZNF503Q96F45 646 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 ZNF747Q9BV97 191 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 CEP72Q9P209 647 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 SIK3Q9Y2K2 1263 aa8.4□□□□□ -1.06
SS18-214ENST00000580003 GUCY1A2P33402 732 aa8.39□□□□□ -1.07
SS18-214ENST00000580003 SLC6A9P48067 706 aa8.39□□□□□ -1.07
SS18-214ENST00000580003 TOB2Q14106 344 aaPredicted RBP8.39□□□□□ -1.07
SS18-214ENST00000580003 ODF1Q14990 250 aa8.39□□□□□ -1.07
SS18-214ENST00000580003 RABL3Q5HYI8 236 aa8.39□□□□□ -1.07
SS18-214ENST00000580003 AFMIDQ63HM1 303 aa8.39□□□□□ -1.07
SS18-214ENST00000580003 NDC1Q9BTX1 674 aa8.39□□□□□ -1.07
SS18-214ENST00000580003 KCNH6Q9H252 994 aa8.39□□□□□ -1.07
SS18-214ENST00000580003 SORCS3Q9UPU3 1222 aa8.39□□□□□ -1.07
SS18-214ENST00000580003 ATRNL1Q5VV63 1379 aa8.38□□□□□ -1.07
SS18-214ENST00000580003 GPR32O75388 356 aa8.38□□□□□ -1.07
SS18-214ENST00000580003 PDGFRBP09619 1106 aa8.38□□□□□ -1.07
SS18-214ENST00000580003 ATP5JP18859 108 aa8.38□□□□□ -1.07
SS18-214ENST00000580003 ADKP55263 362 aaKnown RBP8.38□□□□□ -1.07
SS18-214ENST00000580003 UAP1L1Q3KQV9 507 aa8.38□□□□□ -1.07
SS18-214ENST00000580003 LSM12Q3MHD2 195 aaKnown RBP8.38□□□□□ -1.07
SS18-214ENST00000580003 ATXN7L2Q5T6C5 722 aaPredicted RBP8.38□□□□□ -1.07
SS18-214ENST00000580003 MIER2Q8N344 545 aa8.38□□□□□ -1.07
SS18-214ENST00000580003 RNF169Q8NCN4 708 aa8.38□□□□□ -1.07
SS18-214ENST00000580003 SLC35B2Q8TB61 432 aa8.38□□□□□ -1.07
SS18-214ENST00000580003 CACTINQ8WUQ7 758 aaKnown RBP8.38□□□□□ -1.07
SS18-214ENST00000580003 MRI1Q9BV20 369 aa8.38□□□□□ -1.07
SS18-214ENST00000580003 TRIM24O15164 1050 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 FAM20BO75063 409 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 SCAF4O95104 1147 aaKnown RBP8.37□□□□□ -1.07
SS18-214ENST00000580003 ALDH1A3P47895 512 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 NEK2P51955 445 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 RAP2BP61225 183 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 DGCR2P98153 550 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 PPP4R3AQ6IN85 833 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 RSPH3Q86UC2 560 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 CPT1CQ8TCG5 803 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 COA7Q96BR5 231 aa8.37□□□□□ -1.07
SS18-214ENST00000580003 AASDHPPTQ9NRN7 309 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms