RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 SSX2IPQ9Y2D8 614 aa16.3■□□□□ 0.2
SS18-212ENST00000579061 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.29■□□□□ 0.2
SS18-212ENST00000579061 PTGESO14684 152 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 CLASP2O75122 1294 aaKnown RBP16.29■□□□□ 0.2
SS18-212ENST00000579061 BRD1O95696 1058 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 THP07101 528 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 MAPTP10636 758 aaKnown RBP16.29■□□□□ 0.2
SS18-212ENST00000579061 HOXB8P17481 243 aaPredicted RBP16.29■□□□□ 0.2
SS18-212ENST00000579061 PROZP22891 400 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 GRM5P41594 1212 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 NCKAP1LP55160 1127 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 TUSC3Q13454 348 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 PTPN14Q15678 1187 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 USP49Q70CQ1 688 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 GPR65Q8IYL9 337 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 LINC00301Q8NCQ3 95 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 CASP10Q92851 521 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 CLIC6Q96NY7 704 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 REEP2Q9BRK0 252 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 HERC2P3Q9BVR0 1158 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 TARS2Q9BW92 718 aaKnown RBP16.29■□□□□ 0.2
SS18-212ENST00000579061 CDT1Q9H211 546 aa16.29■□□□□ 0.2
SS18-212ENST00000579061 PRG3Q9Y2Y8 225 aaPredicted RBP16.29■□□□□ 0.2
SS18-212ENST00000579061 NPHP3-ACAD11A0A0J9YXS1 232 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 ABLIM1O14639 778 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 LILRB3O75022 631 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 PPP6R2O75170 966 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 TOM1L1O75674 476 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 FAM13AO94988 1023 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 ZSCAN22P10073 491 aaPredicted RBP16.28■□□□□ 0.2
SS18-212ENST00000579061 MCF2P10911 925 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 ABCD1P33897 745 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 DHX8Q14562 1220 aaKnown RBP16.28■□□□□ 0.2
SS18-212ENST00000579061 STK38Q15208 465 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 CLUL1Q15846 466 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 ZNF568Q3ZCX4 644 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 SPECC1Q5M775 1068 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 ANKRD54Q6NXT1 300 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 MPZL3Q6UWV2 235 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 ZPBP2Q6X784 338 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 PPFIBP1Q86W92 1011 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 TMEM87AQ8NBN3 555 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 CCDC94Q9BW85 323 aaPredicted RBP16.28■□□□□ 0.2
SS18-212ENST00000579061 PARVGQ9HBI0 331 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 TOPORSQ9NS56 1045 aaPredicted RBP16.28■□□□□ 0.2
SS18-212ENST00000579061 GDAQ9Y2T3 454 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 HCFC2Q9Y5Z7 792 aa16.28■□□□□ 0.2
SS18-212ENST00000579061 C19orf67A6NJJ6 358 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 YEATS4O95619 227 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 KRT18P05783 430 aaKnown RBP16.27■□□□□ 0.2
SS18-212ENST00000579061 URODP06132 367 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 CA8P35219 290 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 YARSP54577 528 aaKnown RBP16.27■□□□□ 0.2
SS18-212ENST00000579061 CACNB1Q02641 598 aaPredicted RBP16.27■□□□□ 0.2
SS18-212ENST00000579061 ZP2Q05996 745 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 NAB2Q15742 525 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 XKR4Q5GH76 650 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 RRAGBQ5VZM2 374 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 ATL3Q6DD88 541 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 CCDC73Q6ZRK6 1079 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 HAUS6Q7Z4H7 955 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 ADHFE1Q8IWW8 467 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 GJD3Q8N144 294 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 MYCT1Q8N699 235 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 AUTS2Q8WXX7 1259 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 POP1Q99575 1024 aaKnown RBP16.27■□□□□ 0.2
SS18-212ENST00000579061 TCHPQ9BT92 498 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 EMILIN2Q9BXX0 1053 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 MRPL17Q9NRX2 175 aaKnown RBP16.27■□□□□ 0.2
SS18-212ENST00000579061 ADAM28Q9UKQ2 775 aa16.27■□□□□ 0.2
SS18-212ENST00000579061 C5orf42Q9H799 3197 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 SPTLC2O15270 562 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 TRAK2O60296 914 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 TBCAO75347 108 aaKnown RBP16.26■□□□□ 0.19
SS18-212ENST00000579061 F13A1P00488 732 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 RBM10P98175 930 aaKnown RBP16.26■□□□□ 0.19
SS18-212ENST00000579061 DSG1Q02413 1049 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 HSP90AA2PQ14568 343 aaPredicted RBP16.26■□□□□ 0.19
SS18-212ENST00000579061 TPRNQ4KMQ1 711 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 FUT10Q6P4F1 479 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 SYCE2Q6PIF2 218 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 ALKAL1Q6UXT8 129 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 SV2BQ7L1I2 683 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 SLC22A17Q8WUG5 538 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 SUSD6Q92537 303 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 PPP1R10Q96QC0 940 aaKnown RBP16.26■□□□□ 0.19
SS18-212ENST00000579061 S1PR5Q9H228 398 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 CHST7Q9NS84 486 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 DZANK1Q9NVP4 752 aa16.26■□□□□ 0.19
SS18-212ENST00000579061 USP15Q9Y4E8 981 aaPredicted RBP16.26■□□□□ 0.19
SS18-212ENST00000579061 PDCD11Q14690 1871 aaKnown RBP16.26■□□□□ 0.19
SS18-212ENST00000579061 MTCL1Q9Y4B5 1905 aaKnown RBP16.25■□□□□ 0.19
SS18-212ENST00000579061 C1RP00736 705 aa16.25■□□□□ 0.19
SS18-212ENST00000579061 PIGRP01833 764 aa16.25■□□□□ 0.19
SS18-212ENST00000579061 GLUD2P49448 558 aa16.25■□□□□ 0.19
SS18-212ENST00000579061 MCL1Q07820 350 aa16.25■□□□□ 0.19
SS18-212ENST00000579061 NOLC1Q14978 699 aaKnown RBP eCLIP16.25■□□□□ 0.19
SS18-212ENST00000579061 USP41Q3LFD5 358 aa16.25■□□□□ 0.19
SS18-212ENST00000579061 KIAA0319Q5VV43 1072 aa16.25■□□□□ 0.19
SS18-212ENST00000579061 LLGL2Q6P1M3 1020 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms