RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 HTRA2O43464 458 aaPredicted RBP7.04□□□□□ -1.28
NUP88-213ENST00000576862 ALDH1L1O75891 902 aa7.04□□□□□ -1.28
NUP88-213ENST00000576862 MAN2A2P49641 1150 aa7.04□□□□□ -1.28
NUP88-213ENST00000576862 PER3P56645 1201 aa7.04□□□□□ -1.28
NUP88-213ENST00000576862 METTL24Q5JXM2 366 aa7.04□□□□□ -1.28
NUP88-213ENST00000576862 RNF207Q6ZRF8 634 aa7.04□□□□□ -1.28
NUP88-213ENST00000576862 GGNQ86UU5 652 aa7.04□□□□□ -1.28
NUP88-213ENST00000576862 TMPRSS6Q8IU80 811 aa7.04□□□□□ -1.28
NUP88-213ENST00000576862 PGBD4Q96DM1 585 aa7.04□□□□□ -1.28
NUP88-213ENST00000576862 UHRF1Q96T88 793 aaPredicted RBP7.04□□□□□ -1.28
NUP88-213ENST00000576862 LANCL2Q9NS86 450 aa7.04□□□□□ -1.28
NUP88-213ENST00000576862 MYRFQ9Y2G1 1151 aa7.04□□□□□ -1.28
NUP88-213ENST00000576862 CXorf49A8MYA2 514 aaPredicted RBP7.03□□□□□ -1.28
NUP88-213ENST00000576862 B5MCH6 92 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 AMY1AP04745 511 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 FPR1P21462 350 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 CCND1P24385 295 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 RECQLP46063 649 aaPredicted RBP7.03□□□□□ -1.28
NUP88-213ENST00000576862 PTTG1IPP53801 180 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 KIF23Q02241 960 aaPredicted RBP7.03□□□□□ -1.28
NUP88-213ENST00000576862 CRHR2Q13324 411 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 SP140Q13342 867 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 VPS72Q15906 364 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 BMT2Q1RMZ1 405 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 ZBTB46Q86UZ6 589 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 C1orf210Q8IVY1 113 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 CMTR2Q8IYT2 770 aaKnown RBP7.03□□□□□ -1.28
NUP88-213ENST00000576862 STON2Q8WXE9 905 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 CEP72Q9P209 647 aa7.03□□□□□ -1.28
NUP88-213ENST00000576862 AJAP1Q9UKB5 411 aaPredicted RBP7.03□□□□□ -1.28
NUP88-213ENST00000576862 TBKBP1A7MCY6 615 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 GRXCR1A8MXD5 290 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 MATN3O15232 486 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 HSP90B1P14625 803 aaKnown RBP7.02□□□□□ -1.29
NUP88-213ENST00000576862 PCSK1P29120 753 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 SLC16A1P53985 500 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 ADKP55263 362 aaKnown RBP7.02□□□□□ -1.29
NUP88-213ENST00000576862 TTF1Q15361 905 aaPredicted RBP7.02□□□□□ -1.29
NUP88-213ENST00000576862 ZXDCQ2QGD7 858 aaPredicted RBP7.02□□□□□ -1.29
NUP88-213ENST00000576862 C3orf36Q3SXR2 165 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 NRN1LQ496H8 165 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 AFMIDQ63HM1 303 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 ZGPATQ8N5A5 531 aaKnown RBP7.02□□□□□ -1.29
NUP88-213ENST00000576862 CCHCR1Q8TD31 782 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 C7orf25Q9BPX7 421 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 ZNF703Q9H7S9 590 aaPredicted RBP7.02□□□□□ -1.29
NUP88-213ENST00000576862 AURKAIP1Q9NWT8 199 aaPredicted RBP7.02□□□□□ -1.29
NUP88-213ENST00000576862 HDAC5Q9UQL6 1122 aa7.02□□□□□ -1.29
NUP88-213ENST00000576862 PNPLA7Q6ZV29 1317 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 CCDC154A6NI56 674 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 SNUPNO95149 360 aaKnown RBP7.01□□□□□ -1.29
NUP88-213ENST00000576862 C1SP09871 688 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 TNFRSF1AP19438 455 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 ALDH1A3P47895 512 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 ATP8B2P98198 1209 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 MCL1Q07820 350 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 MTM1Q13496 603 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 CNGB1Q14028 1251 aaPredicted RBP7.01□□□□□ -1.29
NUP88-213ENST00000576862 TMEM240Q5SV17 173 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 SYT12Q8IV01 421 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 CPA6Q8N4T0 437 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 CASKIN2Q8WXE0 1202 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 HOOK2Q96ED9 719 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 CYFIP2Q96F07 1278 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 ZNF503Q96F45 646 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 SENP6Q9GZR1 1112 aaPredicted RBP7.01□□□□□ -1.29
NUP88-213ENST00000576862 SAP30BPQ9UHR5 308 aaKnown RBP7.01□□□□□ -1.29
NUP88-213ENST00000576862 LUC7L2Q9Y383 392 aaKnown RBP7.01□□□□□ -1.29
NUP88-213ENST00000576862 PCDHA13Q9Y5I0 950 aa7.01□□□□□ -1.29
NUP88-213ENST00000576862 GOLGA6L6A8MZA4 724 aa7□□□□□ -1.29
NUP88-213ENST00000576862 PRR5-ARHGAP8B1AHC4 643 aa7□□□□□ -1.29
NUP88-213ENST00000576862 PJA2O43164 708 aa7□□□□□ -1.29
NUP88-213ENST00000576862 IL2RBP14784 551 aa7□□□□□ -1.29
NUP88-213ENST00000576862 DGCR2P98153 550 aa7□□□□□ -1.29
NUP88-213ENST00000576862 IL10RAQ13651 578 aa7□□□□□ -1.29
NUP88-213ENST00000576862 TOB2Q14106 344 aaPredicted RBP7□□□□□ -1.29
NUP88-213ENST00000576862 PUM1Q14671 1186 aaKnown RBP eCLIP7□□□□□ -1.29
NUP88-213ENST00000576862 DRICH1Q6PGQ1 229 aaPredicted RBP7□□□□□ -1.29
NUP88-213ENST00000576862 RHOT1Q8IXI2 618 aa7□□□□□ -1.29
NUP88-213ENST00000576862 RNF169Q8NCN4 708 aa7□□□□□ -1.29
NUP88-213ENST00000576862 RAB24Q969Q5 203 aa7□□□□□ -1.29
NUP88-213ENST00000576862 HDAC10Q969S8 669 aa7□□□□□ -1.29
NUP88-213ENST00000576862 MANSC1Q9H8J5 431 aa7□□□□□ -1.29
NUP88-213ENST00000576862 TCF7L1Q9HCS4 588 aa7□□□□□ -1.29
NUP88-213ENST00000576862 SLC23A1Q9UHI7 598 aa7□□□□□ -1.29
NUP88-213ENST00000576862 ACTL7AQ9Y615 435 aa7□□□□□ -1.29
NUP88-213ENST00000576862 GPR32O75388 356 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 CLRN1P58418 232 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 SLC25A3Q00325 362 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 TARDBPQ13148 414 aaKnown RBP eCLIP6.99□□□□□ -1.29
NUP88-213ENST00000576862 FOXE3Q13461 319 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 UAP1L1Q3KQV9 507 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 PLEKHG6Q3KR16 790 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 MIIPQ5JXC2 388 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 OTUD7BQ6GQQ9 843 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 MIGA2Q7L4E1 593 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 CACTINQ8WUQ7 758 aaKnown RBP6.99□□□□□ -1.29
NUP88-213ENST00000576862 TFAP2CQ92754 450 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 CEP89Q96ST8 783 aa6.99□□□□□ -1.29
NUP88-213ENST00000576862 MYOCQ99972 504 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms