RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 SFPQP23246 707 aaKnown RBP eCLIP18.32■□□□□ 0.52
VPS53-218ENST00000575207 CCINQ13939 588 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 MCMDC2Q4G0Z9 681 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 FAM78AQ5JUQ0 283 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 FUT10Q6P4F1 479 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 VITQ6UXI7 678 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 MDM1Q8TC05 714 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 DEPDC1BQ8WUY9 529 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 CLSTN3Q9BQT9 956 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 CLMPQ9H6B4 373 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 COL12A1Q99715 3063 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 NUP205Q92621 2012 aa18.32■□□□□ 0.52
VPS53-218ENST00000575207 ZNF213O14771 459 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 CEBPBP17676 345 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 SEC23AQ15436 765 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 MIS18BP1Q6P0N0 1132 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 CCNI2Q6ZMN8 369 aaPredicted RBP18.31■□□□□ 0.52
VPS53-218ENST00000575207 RTL10Q7L3V2 364 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 SLC7A14Q8TBB6 771 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 CRELD1Q96HD1 420 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 ASB16Q96NS5 453 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 UBAC1Q9BSL1 405 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 COLEC11Q9BWP8 271 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 C8orf33Q9H7E9 229 aaPredicted RBP18.31■□□□□ 0.52
VPS53-218ENST00000575207 DKK4Q9UBT3 224 aa18.31■□□□□ 0.52
VPS53-218ENST00000575207 ZNF263O14978 683 aa18.3■□□□□ 0.52
VPS53-218ENST00000575207 RHOP08100 348 aa18.3■□□□□ 0.52
VPS53-218ENST00000575207 IRX4P78413 519 aa18.3■□□□□ 0.52
VPS53-218ENST00000575207 CDC42EP1Q00587 391 aa18.3■□□□□ 0.52
VPS53-218ENST00000575207 TXNDC11Q6PKC3 985 aa18.3■□□□□ 0.52
VPS53-218ENST00000575207 APOL6Q9BWW8 343 aa18.3■□□□□ 0.52
VPS53-218ENST00000575207 A0A087WV48 116 aa18.29■□□□□ 0.52
VPS53-218ENST00000575207 MEFVO15553 781 aaPredicted RBP18.29■□□□□ 0.52
VPS53-218ENST00000575207 NR1I2O75469 434 aa18.29■□□□□ 0.52
VPS53-218ENST00000575207 KIF5BP33176 963 aa18.29■□□□□ 0.52
VPS53-218ENST00000575207 SEMA3BQ13214 749 aa18.29■□□□□ 0.52
VPS53-218ENST00000575207 AXDND1Q5T1B0 1012 aaPredicted RBP18.29■□□□□ 0.52
VPS53-218ENST00000575207 PDXDC1Q6P996 788 aa18.29■□□□□ 0.52
VPS53-218ENST00000575207 PRSS55Q6UWB4 352 aaPredicted RBP18.29■□□□□ 0.52
VPS53-218ENST00000575207 ZNF589Q86UQ0 364 aaPredicted RBP18.29■□□□□ 0.52
VPS53-218ENST00000575207 FAM227BQ96M60 508 aa18.29■□□□□ 0.52
VPS53-218ENST00000575207 INO80BQ9C086 356 aaPredicted RBP18.29■□□□□ 0.52
VPS53-218ENST00000575207 PSTPIP2Q9H939 334 aa18.29■□□□□ 0.52
VPS53-218ENST00000575207 PCDHA6Q9UN73 950 aa18.29■□□□□ 0.52
VPS53-218ENST00000575207 PCDHA8Q9Y5H6 950 aa18.29■□□□□ 0.52
VPS53-218ENST00000575207 PLXNB3Q9ULL4 1909 aa18.28■□□□□ 0.52
VPS53-218ENST00000575207 A0A0D9SFI3 127 aa18.28■□□□□ 0.52
VPS53-218ENST00000575207 CCDC194A0A1B0GVG4 234 aa18.28■□□□□ 0.52
VPS53-218ENST00000575207 MYBPHLA2RUH7 354 aa18.28■□□□□ 0.52
VPS53-218ENST00000575207 SPDYE3A6NKU9 549 aa18.28■□□□□ 0.52
VPS53-218ENST00000575207 PATE3B3GLJ2 98 aa18.28■□□□□ 0.52
VPS53-218ENST00000575207 KARSQ15046 597 aaKnown RBP18.28■□□□□ 0.52
VPS53-218ENST00000575207 RTP2Q5QGT7 225 aa18.28■□□□□ 0.52
VPS53-218ENST00000575207 TRMT1LQ7Z2T5 733 aaKnown RBP18.28■□□□□ 0.52
VPS53-218ENST00000575207 CAMKK1Q8N5S9 505 aa18.28■□□□□ 0.52
VPS53-218ENST00000575207 ADAM28Q9UKQ2 775 aa18.28■□□□□ 0.52
VPS53-218ENST00000575207 MYH9P35579 1960 aaKnown RBP18.28■□□□□ 0.52
VPS53-218ENST00000575207 MYO9AB2RTY4 2548 aa18.27■□□□□ 0.52
VPS53-218ENST00000575207 MICAL2O94851 1124 aa18.27■□□□□ 0.52
VPS53-218ENST00000575207 CEP55Q53EZ4 464 aa18.27■□□□□ 0.52
VPS53-218ENST00000575207 PRSS36Q5K4E3 855 aa18.27■□□□□ 0.52
VPS53-218ENST00000575207 PKN3Q6P5Z2 889 aa18.27■□□□□ 0.52
VPS53-218ENST00000575207 RALGPS2Q86X27 583 aaPredicted RBP18.27■□□□□ 0.52
VPS53-218ENST00000575207 MFSD6LQ8IWD5 586 aa18.27■□□□□ 0.52
VPS53-218ENST00000575207 CSGALNACT1Q8TDX6 532 aa18.27■□□□□ 0.52
VPS53-218ENST00000575207 PIBF1Q8WXW3 757 aa18.27■□□□□ 0.52
VPS53-218ENST00000575207 UBN1Q9NPG3 1134 aa18.27■□□□□ 0.52
VPS53-218ENST00000575207 EVLQ9UI08 416 aaPredicted RBP18.27■□□□□ 0.52
VPS53-218ENST00000575207 DDX19BQ9UMR2 479 aa18.27■□□□□ 0.52
VPS53-218ENST00000575207 ABCA7Q8IZY2 2146 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 A0A087WZ62 844 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 SPECC1L-ADORA2AF8WAN1 911 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 DDX39AO00148 427 aaKnown RBP18.26■□□□□ 0.51
VPS53-218ENST00000575207 MEIS1O00470 390 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 DHX15O43143 795 aaKnown RBP18.26■□□□□ 0.51
VPS53-218ENST00000575207 CTHP32929 405 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 SOX9P48436 509 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 FAM193AP78312 1265 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 LMAN2Q12907 356 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 SCUBE3Q8IX30 993 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 LNX1Q8TBB1 728 aaPredicted RBP18.26■□□□□ 0.51
VPS53-218ENST00000575207 ADAMTS14Q8WXS8 1223 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 SMARCD2Q92925 531 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 FAM167AQ96KS9 214 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 FDXACB1Q9BRP7 624 aaPredicted RBP18.26■□□□□ 0.51
VPS53-218ENST00000575207 SLC8A2Q9UPR5 921 aa18.26■□□□□ 0.51
VPS53-218ENST00000575207 PDCD11Q14690 1871 aaKnown RBP18.26■□□□□ 0.51
VPS53-218ENST00000575207 COL6A6A6NMZ7 2263 aa18.25■□□□□ 0.51
VPS53-218ENST00000575207 CAPN8A6NHC0 703 aa18.25■□□□□ 0.51
VPS53-218ENST00000575207 SLC38A8A6NNN8 435 aa18.25■□□□□ 0.51
VPS53-218ENST00000575207 DCLK1O15075 740 aa18.25■□□□□ 0.51
VPS53-218ENST00000575207 MAP3K13O43283 966 aa18.25■□□□□ 0.51
VPS53-218ENST00000575207 KPNA1P52294 538 aaPredicted RBP18.25■□□□□ 0.51
VPS53-218ENST00000575207 UBE2SQ16763 222 aa18.25■□□□□ 0.51
VPS53-218ENST00000575207 CATSPER4Q7RTX7 472 aa18.25■□□□□ 0.51
VPS53-218ENST00000575207 TMEFF1Q8IYR6 380 aa18.25■□□□□ 0.51
VPS53-218ENST00000575207 TRPV4Q9HBA0 871 aa18.25■□□□□ 0.51
VPS53-218ENST00000575207 AGPAT5Q9NUQ2 364 aa18.25■□□□□ 0.51
VPS53-218ENST00000575207 WDR27A2RRH5 827 aa18.24■□□□□ 0.51
VPS53-218ENST00000575207 ARL5CA6NH57 179 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms