RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 TGM5O43548 720 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 NPR3P17342 541 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 GBP2P32456 591 aaPredicted RBP16.51■□□□□ 0.23
CLN3-236ENST00000568558 CREMQ03060 361 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 HSP90AA2PQ14568 343 aaPredicted RBP16.51■□□□□ 0.23
CLN3-236ENST00000568558 SAFBQ15424 915 aaKnown RBP eCLIP16.51■□□□□ 0.23
CLN3-236ENST00000568558 LILRA6Q6PI73 481 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 POTEGQ6S5H5 508 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 GLYCTKQ8IVS8 523 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 RIN2Q8WYP3 895 aaPredicted RBP16.51■□□□□ 0.23
CLN3-236ENST00000568558 BSNDQ8WZ55 320 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 C2orf40Q9H1Z8 148 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 PDZD7Q9H5P4 517 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 EPS15L1Q9UBC2 864 aa16.51■□□□□ 0.23
CLN3-236ENST00000568558 SF3B1O75533 1304 aaKnown RBP eCLIP16.5■□□□□ 0.233e-9■■■■■ 164.7
CLN3-236ENST00000568558 CITO14578 2027 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 N4BP3O15049 544 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 NARSO43776 548 aaKnown RBP16.5■□□□□ 0.23
CLN3-236ENST00000568558 TADA2AO75478 443 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 RPL17P18621 184 aaKnown RBP16.5■□□□□ 0.23
CLN3-236ENST00000568558 AOC1P19801 751 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 RPA1P27694 616 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 ORC2Q13416 577 aaPredicted RBP16.5■□□□□ 0.23
CLN3-236ENST00000568558 TUSC3Q13454 348 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 RTP2Q5QGT7 225 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 ERMNQ8TAM6 284 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 RSAD2Q8WXG1 361 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 MYADMQ96S97 322 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 NT5C3AQ9H0P0 336 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 ZDHHC7Q9NXF8 308 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 SNTG2Q9NY99 539 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 FBXL21Q9UKT6 434 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 CFAP54Q96N23 3096 aa16.5■□□□□ 0.23
CLN3-236ENST00000568558 MYH11P35749 1972 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 CASTOR2A6NHX0 329 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 PTGESO14684 152 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 EIF5BO60841 1220 aaKnown RBP16.49■□□□□ 0.23
CLN3-236ENST00000568558 EDN1P05305 212 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 OR52Z1P0C646 297 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 CYP11B2P19099 503 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 NBL1P41271 181 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 PRPF4BQ13523 1007 aaKnown RBP16.49■□□□□ 0.23
CLN3-236ENST00000568558 MAPK6Q16659 721 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 PADI6Q6TGC4 694 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 PRSS55Q6UWB4 352 aaPredicted RBP16.49■□□□□ 0.23
CLN3-236ENST00000568558 HASPINQ8TF76 798 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 PRKD2Q9BZL6 878 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 CCDC113Q9H0I3 377 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 PIDD1Q9HB75 910 aa16.49■□□□□ 0.23
CLN3-236ENST00000568558 PDCD11Q14690 1871 aaKnown RBP16.48■□□□□ 0.23
CLN3-236ENST00000568558 ARHGEF35A5YM69 484 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 ACKR2O00590 384 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 PI15O43692 258 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 ZMYND10O75800 440 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 RECQL4O94761 1208 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 KIF4AO95239 1232 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 PRKCBP05771 671 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 NAMPTP43490 491 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 ZNF174Q15697 407 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 NAB2Q15742 525 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 TMEM132AQ24JP5 1023 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 CCDC83Q8IWF9 413 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 SIX5Q8N196 739 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 C8orf76Q96K31 380 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 ADPGKQ9BRR6 497 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 CXCL16Q9H2A7 254 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 FOXP1Q9H334 677 aaPredicted RBP16.48■□□□□ 0.23
CLN3-236ENST00000568558 FBXW11Q9UKB1 542 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 MIA3Q5JRA6 1907 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 NOTCH4Q99466 2003 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 VPS13AQ96RL7 3174 aa16.48■□□□□ 0.23
CLN3-236ENST00000568558 SEC24BO95487 1268 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 THP07101 528 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 CFHP08603 1231 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 MUTP22033 750 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 PPP2R5AQ15172 486 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 TTC38Q5R3I4 469 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 FAM171A1Q5VUB5 890 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 EEF1DP3Q658K8 133 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 HAUS3Q68CZ6 603 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 GET4Q7L5D6 327 aaPredicted RBP16.47■□□□□ 0.23
CLN3-236ENST00000568558 ASCL5Q7RTU5 278 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 NOSTRINQ8IVI9 506 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 SLC44A3Q8N4M1 653 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 PIK3R5Q8WYR1 880 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 NXPE3Q969Y0 559 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 RTP3Q9BQQ7 232 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 LLPHQ9BRT6 129 aaKnown RBP16.47■□□□□ 0.23
CLN3-236ENST00000568558 TTPALQ9BTX7 342 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.47■□□□□ 0.23
CLN3-236ENST00000568558 WNT16Q9UBV4 365 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 LIMCH1Q9UPQ0 1083 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 USP20Q9Y2K6 914 aa16.47■□□□□ 0.23
CLN3-236ENST00000568558 FAM186AA6NE01 2351 aa16.46■□□□□ 0.23
CLN3-236ENST00000568558 PRR23AA6NEV1 266 aa16.46■□□□□ 0.23
CLN3-236ENST00000568558 LAMP2P13473 410 aa16.46■□□□□ 0.23
CLN3-236ENST00000568558 LIG1P18858 919 aa16.46■□□□□ 0.23
CLN3-236ENST00000568558 PSMD5Q16401 504 aa16.46■□□□□ 0.23
CLN3-236ENST00000568558 ECM1Q16610 540 aa16.46■□□□□ 0.23
CLN3-236ENST00000568558 CCDC105Q8IYK2 499 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms