RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 SMG8Q8ND04 991 aaKnown RBP22.47■■□□□ 1.19
CLN3-212ENST00000564574 FAM213AQ9BRX8 229 aa22.47■■□□□ 1.19
CLN3-212ENST00000564574 SRRTQ9BXP5 876 aaKnown RBP22.47■■□□□ 1.19
CLN3-212ENST00000564574 THAP9Q9H5L6 903 aa22.47■■□□□ 1.19
CLN3-212ENST00000564574 CPSF3Q9UKF6 684 aaKnown RBP22.47■■□□□ 1.19
CLN3-212ENST00000564574 NFE2L3Q9Y4A8 694 aa22.47■■□□□ 1.19
CLN3-212ENST00000564574 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.46■■□□□ 1.19
CLN3-212ENST00000564574 ZNF233A6NK53 670 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 BECN2A8MW95 431 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 STAG3L1P0CL83 205 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 EPB41P11171 864 aaKnown RBP22.46■■□□□ 1.19
CLN3-212ENST00000564574 ITGA4P13612 1032 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 PSMC2P35998 433 aaKnown RBP22.46■■□□□ 1.19
CLN3-212ENST00000564574 IQCB1Q15051 598 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 CEP135Q66GS9 1140 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 C16orf59Q7L2K0 433 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 FAM114A1Q8IWE2 563 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 DHX40Q8IX18 779 aaKnown RBP22.46■■□□□ 1.19
CLN3-212ENST00000564574 CEP120Q8N960 986 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 ACAP3Q96P50 834 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 NXF3Q9H4D5 531 aaKnown RBP22.46■■□□□ 1.19
CLN3-212ENST00000564574 CBX8Q9HC52 389 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 UBN1Q9NPG3 1134 aa22.46■■□□□ 1.19
CLN3-212ENST00000564574 PDCD11Q14690 1871 aaKnown RBP22.45■■□□□ 1.19
CLN3-212ENST00000564574 GOLGA8IPA6NC78 632 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 GOLGA8JA6NMD2 632 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 ACOT2P49753 483 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 YARSP54577 528 aaKnown RBP22.45■■□□□ 1.18
CLN3-212ENST00000564574 ENPEPQ07075 957 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 NCAPHQ15003 741 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 SNRNP35Q16560 246 aaKnown RBP22.45■■□□□ 1.18
CLN3-212ENST00000564574 TMEM240Q5SV17 173 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 CRELD2Q6UXH1 353 aaPredicted RBP22.45■■□□□ 1.18
CLN3-212ENST00000564574 ZNF365Q70YC5 407 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 ZNF598Q86UK7 904 aaKnown RBP22.45■■□□□ 1.18
CLN3-212ENST00000564574 BRSK2Q8IWQ3 736 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 RPF1Q9H9Y2 349 aaKnown RBP22.45■■□□□ 1.18
CLN3-212ENST00000564574 METTL14Q9HCE5 456 aaKnown RBP22.45■■□□□ 1.18
CLN3-212ENST00000564574 TOPORSQ9NS56 1045 aaPredicted RBP22.45■■□□□ 1.18
CLN3-212ENST00000564574 TMEM161AQ9NX61 479 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 SNTG2Q9NY99 539 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 TRIP11Q15643 1979 aa22.45■■□□□ 1.18
CLN3-212ENST00000564574 AKAP3O75969 853 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 AMHP03971 560 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 TNFSF9P41273 254 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 CASP4P49662 377 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 TPM4P67936 248 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 SURF1Q15526 300 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 CBWD2Q8IUF1 395 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 CD302Q8IX05 232 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 FAM186BQ8IYM0 893 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 ZSWIM2Q8NEG5 633 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 RSPH1Q8WYR4 309 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.44■■□□□ 1.183e-6■□□□□ 10.1
CLN3-212ENST00000564574 MTIF3Q9H2K0 278 aaKnown RBP22.44■■□□□ 1.18
CLN3-212ENST00000564574 PLEKHA5Q9HAU0 1116 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 RBAKQ9NYW8 714 aaPredicted RBP22.44■■□□□ 1.18
CLN3-212ENST00000564574 GIT1Q9Y2X7 761 aa22.44■■□□□ 1.18
CLN3-212ENST00000564574 IL18RAPO95256 599 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 ATF7P17544 494 aaPredicted RBP22.43■■□□□ 1.18
CLN3-212ENST00000564574 KCNJ6P48051 423 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 EPHB4P54760 987 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 MARSP56192 900 aaKnown RBP22.43■■□□□ 1.18
CLN3-212ENST00000564574 OSTNP61366 133 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 CCDC40Q4G0X9 1142 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 SEZ6Q53EL9 994 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 ZBTB41Q5SVQ8 909 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 INTS8Q75QN2 995 aaKnown RBP22.43■■□□□ 1.18
CLN3-212ENST00000564574 FRMD5Q7Z6J6 570 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 USP37Q86T82 979 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 NPAS4Q8IUM7 802 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 RDH13Q8NBN7 331 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 HERVK_113Q902F9 699 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 MFSD14AQ96MC6 490 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 PARP2Q9UGN5 583 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 LRFN2Q9ULH4 789 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 HES2Q9Y543 173 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 PCDHB7Q9Y5E2 793 aa22.43■■□□□ 1.18
CLN3-212ENST00000564574 PTPRSQ13332 1948 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 GOLGA6L19H0YKK7 550 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 RBAK-RBAKDNI3L0D1 243 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 HOXA2O43364 376 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 RECQL4O94761 1208 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 ADRB2P07550 413 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 KRT13P13646 458 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 MAGEA10P43363 369 aaPredicted RBP22.42■■□□□ 1.18
CLN3-212ENST00000564574 MCCD1P59942 119 aaPredicted RBP22.42■■□□□ 1.18
CLN3-212ENST00000564574 WDR5P61964 334 aaKnown RBP22.42■■□□□ 1.18
CLN3-212ENST00000564574 SPAG1Q07617 926 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 CYP24A1Q07973 514 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 ENOX2Q16206 610 aaKnown RBP22.42■■□□□ 1.18
CLN3-212ENST00000564574 CDKAL1Q5VV42 579 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 OTOP2Q7RTS6 562 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 TMEM192Q8IY95 271 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 TSPAN18Q96SJ8 248 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 APOL6Q9BWW8 343 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 ASB7Q9H672 318 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 RSAD1Q9HA92 442 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 FANCLQ9NW38 375 aa22.42■■□□□ 1.18
CLN3-212ENST00000564574 MAGEC2Q9UBF1 373 aaPredicted RBP22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms