RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 LAMTOR4Q0VGL1 99 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 NECTIN1Q15223 517 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 RNF20Q5VTR2 975 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 NOTUMQ6P988 496 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 ANO5Q75V66 913 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 DHX32Q7L7V1 743 aaKnown RBP8.17□□□□□ -1.1
VPS4A-203ENST00000564399 EXOC8Q8IYI6 725 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 HACE1Q8IYU2 909 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 CELF5Q8N6W0 485 aaKnown RBP8.17□□□□□ -1.1
VPS4A-203ENST00000564399 RNF149Q8NC42 400 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 CCDC148Q8NFR7 591 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 ING5Q8WYH8 240 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 MCRS1Q96EZ8 462 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 CPB2Q96IY4 423 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 CEP170P1Q96L14 293 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 MBOAT7Q96N66 472 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 ANO2Q9NQ90 1003 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 HEBP1Q9NRV9 189 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 SEMA4GQ9NTN9 838 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 ANGPTL2Q9UKU9 493 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 GIT1Q9Y2X7 761 aa8.17□□□□□ -1.1
VPS4A-203ENST00000564399 ANKRD11Q6UB99 2663 aaPredicted RBP8.17□□□□□ -1.1
VPS4A-203ENST00000564399 VWA8A3KMH1 1905 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 INO80B-WBP1J3KQ70 363 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 MAN2B1O00754 1011 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 ASAP2O43150 1006 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 GDF9O60383 454 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 DKC1O60832 514 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS4A-203ENST00000564399 LRP3O75074 770 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 SF3B1O75533 1304 aaKnown RBP eCLIP8.16□□□□□ -1.15e-9■■■■■ 94.8
VPS4A-203ENST00000564399 AKAP5P24588 427 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 AXLP30530 894 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 EXOSC10Q01780 885 aaKnown RBP8.16□□□□□ -1.1
VPS4A-203ENST00000564399 COL9A2Q14055 689 aaPredicted RBP8.16□□□□□ -1.1
VPS4A-203ENST00000564399 SIM2Q14190 667 aaPredicted RBP8.16□□□□□ -1.1
VPS4A-203ENST00000564399 TRIP11Q15643 1979 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 PSMD5Q16401 504 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 PABPC1LQ4VXU2 614 aaKnown RBP8.16□□□□□ -1.1
VPS4A-203ENST00000564399 RTP2Q5QGT7 225 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 AXDND1Q5T1B0 1012 aaPredicted RBP8.16□□□□□ -1.1
VPS4A-203ENST00000564399 FAM171A1Q5VUB5 890 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 IL31Q6EBC2 164 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 PRR23CQ6ZRP0 262 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.16□□□□□ -1.1
VPS4A-203ENST00000564399 NPAS3Q8IXF0 933 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 SLC7A14Q8TBB6 771 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 TBCKQ8TEA7 893 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 HASPINQ8TF76 798 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 TCP11Q8WWU5 503 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 DDX1Q92499 740 aaKnown RBP8.16□□□□□ -1.1
VPS4A-203ENST00000564399 ATG2BQ96BY7 2078 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 CCDC51Q96ER9 411 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 CLSTN3Q9BQT9 956 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 TTPALQ9BTX7 342 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 CSRNP2Q9H175 543 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 SLKQ9H2G2 1235 aaPredicted RBP8.16□□□□□ -1.1
VPS4A-203ENST00000564399 HCFC1R1Q9NWW0 138 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 KLK14Q9P0G3 267 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 PARP2Q9UGN5 583 aa8.16□□□□□ -1.1
VPS4A-203ENST00000564399 MRPS23Q9Y3D9 190 aaKnown RBP8.16□□□□□ -1.1
VPS4A-203ENST00000564399 GREB1Q4ZG55 1949 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 PRPF3O43395 683 aaKnown RBP8.15□□□□□ -1.1
VPS4A-203ENST00000564399 EDIL3O43854 480 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 TSPAN1O60635 241 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 ECI2O75521 394 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 TDP2O95551 362 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 HOXA9P31269 272 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 RFC5P40937 340 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 QARSP47897 775 aaKnown RBP8.15□□□□□ -1.1
VPS4A-203ENST00000564399 CCR3P51677 355 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 RCAN1P53805 252 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 NLRP5P59047 1200 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 GRIK3Q13003 919 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 FZD5Q13467 585 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 HSP90AA2PQ14568 343 aaPredicted RBP8.15□□□□□ -1.1
VPS4A-203ENST00000564399 EMC2Q15006 297 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 CSRP2Q16527 193 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 Q4G0T1 1027 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 FERMT3Q86UX7 667 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 ZNF579Q8NAF0 562 aaKnown RBP8.15□□□□□ -1.1
VPS4A-203ENST00000564399 PIK3R5Q8WYR1 880 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 ESYT1Q9BSJ8 1104 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 C22orf23Q9BZE7 217 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 PLA2G2FQ9BZM2 168 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 CHRDQ9H2X0 955 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 NXF3Q9H4D5 531 aaKnown RBP8.15□□□□□ -1.1
VPS4A-203ENST00000564399 DHX33Q9H6R0 707 aaKnown RBP8.15□□□□□ -1.1
VPS4A-203ENST00000564399 BRD9Q9H8M2 597 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 LMAN1LQ9HAT1 526 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 SH2B1Q9NRF2 756 aaPredicted RBP8.15□□□□□ -1.1
VPS4A-203ENST00000564399 VPS54Q9P1Q0 977 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 DNMT3BQ9UBC3 853 aaKnown RBP8.15□□□□□ -1.1
VPS4A-203ENST00000564399 CACNG4Q9UBN1 327 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 KCNH3Q9ULD8 1083 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 IGF2RP11717 2491 aa8.15□□□□□ -1.1
VPS4A-203ENST00000564399 TICRRQ7Z2Z1 1910 aa8.15□□□□□ -1.11
VPS4A-203ENST00000564399 CASTOR2A6NHX0 329 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 EML1O00423 815 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 ADAM12O43184 909 aa8.14□□□□□ -1.11
VPS4A-203ENST00000564399 FOXD2O60548 495 aaPredicted RBP8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms