RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.67■□□□□ 0.58
CLN3-211ENST00000564091 EPS15L1Q9UBC2 864 aa18.67■□□□□ 0.58
CLN3-211ENST00000564091 CASTOR2A6NHX0 329 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 STK25O00506 426 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 LIG1P18858 919 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 NEK4P51957 841 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 HSP90AA2PQ14568 343 aaPredicted RBP18.66■□□□□ 0.58
CLN3-211ENST00000564091 CDCA2Q69YH5 1023 aaPredicted RBP18.66■□□□□ 0.58
CLN3-211ENST00000564091 PPP4R3CPQ6ZMV5 832 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 SLC44A3Q8N4M1 653 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 BSNDQ8WZ55 320 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 PRIMPOLQ96LW4 560 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 PRKD2Q9BZL6 878 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 TUFT1Q9NNX1 390 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 PRMT7Q9NVM4 692 aaPredicted RBP18.66■□□□□ 0.58
CLN3-211ENST00000564091 SNTG2Q9NY99 539 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 FNIP2Q9P278 1114 aa18.66■□□□□ 0.58
CLN3-211ENST00000564091 KRBA1A5PL33 1030 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 PRR23AA6NEV1 266 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 TMEM132AQ24JP5 1023 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 GET4Q7L5D6 327 aaPredicted RBP18.65■□□□□ 0.58
CLN3-211ENST00000564091 ZBTB8OSQ8IWT0 167 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 CCDC105Q8IYK2 499 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 GPR65Q8IYL9 337 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 MCPH1Q8NEM0 835 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 NACC1Q96RE7 527 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 PDZD7Q9H5P4 517 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 POLD4Q9HCU8 107 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 ZDHHC7Q9NXF8 308 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 WNT16Q9UBV4 365 aa18.65■□□□□ 0.58
CLN3-211ENST00000564091 PTGESO14684 152 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 PAPLNO95428 1278 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 C1RP00736 705 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 TUSC3Q13454 348 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 ZNF174Q15697 407 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 FAM187BQ17R55 369 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 FAM171A1Q5VUB5 890 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 PADI6Q6TGC4 694 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 CEP57Q86XR8 500 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 NOSTRINQ8IVI9 506 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 DTWD2Q8NBA8 298 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 RTP3Q9BQQ7 232 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 POLR3CQ9BUI4 534 aaPredicted RBP18.64■□□□□ 0.57
CLN3-211ENST00000564091 CA14Q9ULX7 337 aa18.64■□□□□ 0.57
CLN3-211ENST00000564091 SF3B1O75533 1304 aaKnown RBP eCLIP18.64■□□□□ 0.573e-9■■■■■ 206.8
CLN3-211ENST00000564091 ZMYND10O75800 440 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 RECQL4O94761 1208 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 KIF4AO95239 1232 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 EDN1P05305 212 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 LAMP2P13473 410 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 CYP11B2P19099 503 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 CREMQ03060 361 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 PRPF4BQ13523 1007 aaKnown RBP18.63■□□□□ 0.57
CLN3-211ENST00000564091 ANGPT1Q15389 498 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 SAFBQ15424 915 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLN3-211ENST00000564091 MAPK6Q16659 721 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 EEF1DP3Q658K8 133 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 NKD2Q969F2 451 aaPredicted RBP18.63■□□□□ 0.57
CLN3-211ENST00000564091 CLSTN3Q9BQT9 956 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 TTPALQ9BTX7 342 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 KIFC3Q9BVG8 833 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 C2orf40Q9H1Z8 148 aa18.63■□□□□ 0.57
CLN3-211ENST00000564091 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLN3-211ENST00000564091 ARHGEF35A5YM69 484 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 N4BP3O15049 544 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 PRKCBP05771 671 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 THP07101 528 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 SRFP11831 508 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 IGFBP6P24592 240 aaPredicted RBP18.62■□□□□ 0.57
CLN3-211ENST00000564091 GRASPQ7Z6J2 395 aaPredicted RBP18.62■□□□□ 0.57
CLN3-211ENST00000564091 DEPTORQ8TB45 409 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 LNX1Q8TBB1 728 aaPredicted RBP18.62■□□□□ 0.57
CLN3-211ENST00000564091 GPR152Q8TDT2 470 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 NXPE3Q969Y0 559 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 FBXW11Q9UKB1 542 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 GDAQ9Y2T3 454 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 ZMYM2Q9UBW7 1377 aa18.62■□□□□ 0.57
CLN3-211ENST00000564091 ANHXE9PGG2 379 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 ACKR2O00590 384 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 ADAM12O43184 909 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 OR52Z1P0C646 297 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 RFX1P22670 979 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 RPA1P27694 616 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 NTHL1P78549 312 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 HTR4Q13639 388 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 NAB2Q15742 525 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 PSMD5Q16401 504 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 ECM1Q16610 540 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 ERMNQ8TAM6 284 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 PIK3R5Q8WYR1 880 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 RPP25Q9BUL9 199 aaKnown RBP18.61■□□□□ 0.57
CLN3-211ENST00000564091 CCDC113Q9H0I3 377 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 TBC1D17Q9HA65 648 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 NUMBLQ9Y6R0 609 aa18.61■□□□□ 0.57
CLN3-211ENST00000564091 FAM186AA6NE01 2351 aa18.6■□□□□ 0.57
CLN3-211ENST00000564091 NEFLP07196 543 aa18.6■□□□□ 0.57
CLN3-211ENST00000564091 FSHRP23945 695 aa18.6■□□□□ 0.57
CLN3-211ENST00000564091 NAMPTP43490 491 aa18.6■□□□□ 0.57
CLN3-211ENST00000564091 GLRA4Q5JXX5 417 aa18.6■□□□□ 0.57
CLN3-211ENST00000564091 LIN9Q5TKA1 542 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms