RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 KIFC3Q9BVG8 833 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 FOXP1Q9H334 677 aaPredicted RBP21.02■□□□□ 0.96
VPS35-202ENST00000561713 POLD4Q9HCU8 107 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 WNT16Q9UBV4 365 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 DOCK6Q96HP0 2047 aa21.02■□□□□ 0.96
VPS35-202ENST00000561713 CLUHO75153 1309 aa21.02■□□□□ 0.95
VPS35-202ENST00000561713 DOCK8Q8NF50 2099 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 GLUD1P00367 558 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 GLUD2P49448 558 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 DSC1Q08554 894 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 ECM1Q16610 540 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 NOSTRINQ8IVI9 506 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 RNF168Q8IYW5 571 aaPredicted RBP21.01■□□□□ 0.95
VPS35-202ENST00000561713 SLC44A3Q8N4M1 653 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 CNNM3Q8NE01 707 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 SMG7Q92540 1137 aaKnown RBP21.01■□□□□ 0.95
VPS35-202ENST00000561713 STAMQ92783 540 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 ZNF707Q96C28 371 aaPredicted RBP21.01■□□□□ 0.95
VPS35-202ENST00000561713 RXFP1Q9HBX9 757 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 UBN1Q9NPG3 1134 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 EPS15L1Q9UBC2 864 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 CA14Q9ULX7 337 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 SSX2IPQ9Y2D8 614 aa21.01■□□□□ 0.95
VPS35-202ENST00000561713 ARHGEF35A5YM69 484 aa21■□□□□ 0.95
VPS35-202ENST00000561713 HMGN5P82970 282 aaKnown RBP21■□□□□ 0.95
VPS35-202ENST00000561713 PCBP1Q15365 356 aaKnown RBP eCLIP21■□□□□ 0.95
VPS35-202ENST00000561713 CDCA2Q69YH5 1023 aaPredicted RBP21■□□□□ 0.95
VPS35-202ENST00000561713 SLC27A1Q6PCB7 646 aa21■□□□□ 0.95
VPS35-202ENST00000561713 PADI6Q6TGC4 694 aa21■□□□□ 0.95
VPS35-202ENST00000561713 ERMP1Q7Z2K6 904 aa21■□□□□ 0.95
VPS35-202ENST00000561713 PALB2Q86YC2 1186 aa21■□□□□ 0.95
VPS35-202ENST00000561713 MCPH1Q8NEM0 835 aa21■□□□□ 0.95
VPS35-202ENST00000561713 POLR3CQ9BUI4 534 aaPredicted RBP21■□□□□ 0.95
VPS35-202ENST00000561713 NFKBIZQ9BYH8 718 aa21■□□□□ 0.95
VPS35-202ENST00000561713 RHOBTB2Q9BYZ6 727 aa21■□□□□ 0.95
VPS35-202ENST00000561713 DPP7Q9UHL4 492 aa21■□□□□ 0.95
VPS35-202ENST00000561713 CENPBP07199 599 aaPredicted RBP20.99■□□□□ 0.95
VPS35-202ENST00000561713 CCT6AP40227 531 aaKnown RBP20.99■□□□□ 0.95
VPS35-202ENST00000561713 DSG1Q02413 1049 aa20.99■□□□□ 0.95
VPS35-202ENST00000561713 POU5F1BQ06416 359 aa20.99■□□□□ 0.95
VPS35-202ENST00000561713 NCBP1Q09161 790 aaKnown RBP20.99■□□□□ 0.95
VPS35-202ENST00000561713 TMEM132AQ24JP5 1023 aa20.99■□□□□ 0.95
VPS35-202ENST00000561713 ELMSAN1Q6PJG2 1045 aa20.99■□□□□ 0.95
VPS35-202ENST00000561713 CYP26C1Q6V0L0 522 aa20.99■□□□□ 0.95
VPS35-202ENST00000561713 GSTCDQ8NEC7 633 aa20.99■□□□□ 0.95
VPS35-202ENST00000561713 ERMNQ8TAM6 284 aa20.99■□□□□ 0.95
VPS35-202ENST00000561713 NACC1Q96RE7 527 aa20.99■□□□□ 0.95
VPS35-202ENST00000561713 CXCL16Q9H2A7 254 aa20.99■□□□□ 0.95
VPS35-202ENST00000561713 SH2B1Q9NRF2 756 aaPredicted RBP20.99■□□□□ 0.95
VPS35-202ENST00000561713 PARP2Q9UGN5 583 aa20.99■□□□□ 0.95
VPS35-202ENST00000561713 PP2D1A8MPX8 630 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 RFX1P22670 979 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 RPA1P27694 616 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 RBM25P49756 843 aaKnown RBP20.98■□□□□ 0.95
VPS35-202ENST00000561713 ZBTB8OSQ8IWT0 167 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 ST13P5Q8NFI4 369 aaPredicted RBP20.98■□□□□ 0.95
VPS35-202ENST00000561713 KCNG4Q8TDN1 519 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 RIN2Q8WYP3 895 aaPredicted RBP20.98■□□□□ 0.95
VPS35-202ENST00000561713 ZSCAN31Q96LW9 406 aaPredicted RBP20.98■□□□□ 0.95
VPS35-202ENST00000561713 PDZD7Q9H5P4 517 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 TBC1D17Q9HA65 648 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 CHST7Q9NS84 486 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 NOL7Q9UMY1 257 aaKnown RBP20.98■□□□□ 0.95
VPS35-202ENST00000561713 GIT1Q9Y2X7 761 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 R4GN57 208 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 CITO14578 2027 aa20.98■□□□□ 0.95
VPS35-202ENST00000561713 EP300Q09472 2414 aaPredicted RBP20.98■□□□□ 0.95
VPS35-202ENST00000561713 CACNA1AO00555 2505 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 A0A1B0GUA9 196 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 TGM5O43548 720 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 PRKCBP05771 671 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 SRFP11831 508 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 XRCC6P12956 609 aaKnown RBP eCLIP20.97■□□□□ 0.95
VPS35-202ENST00000561713 TOB1P50616 345 aaPredicted RBP20.97■□□□□ 0.95
VPS35-202ENST00000561713 ORC2Q13416 577 aaPredicted RBP20.97■□□□□ 0.95
VPS35-202ENST00000561713 SPECC1Q5M775 1068 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 EEF1DP3Q658K8 133 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 HAUS3Q68CZ6 603 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 PPP4R3CPQ6ZMV5 832 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 GLYCTKQ8IVS8 523 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 HACE1Q8IYU2 909 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 C4orf32Q8N8J7 132 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 GPR152Q8TDT2 470 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 HASPINQ8TF76 798 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 PAAF1Q9BRP4 392 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 GPR62Q9BZJ7 368 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 NT5C3AQ9H0P0 336 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 BHMT2Q9H2M3 363 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 PIDD1Q9HB75 910 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 PRMT7Q9NVM4 692 aaPredicted RBP20.97■□□□□ 0.95
VPS35-202ENST00000561713 PCDHB6Q9Y5E3 794 aa20.97■□□□□ 0.95
VPS35-202ENST00000561713 PDCD11Q14690 1871 aaKnown RBP20.96■□□□□ 0.95
VPS35-202ENST00000561713 CASTOR2A6NHX0 329 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 PAPLNO95428 1278 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 DCNP07585 359 aaKnown RBP20.96■□□□□ 0.95
VPS35-202ENST00000561713 LAMP2P13473 410 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 CYP11B2P19099 503 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 GRIK3Q13003 919 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 FUT10Q6P4F1 479 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 DEPTORQ8TB45 409 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms