RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 THNSL1Q8IYQ7 743 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 SMYD4Q8IYR2 804 aaPredicted RBP10.06□□□□□ -0.8
LDLR-210ENST00000559340 TDHQ8IZJ6 230 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 URGCPQ8TCY9 931 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 NOC3LQ8WTT2 800 aaKnown RBP10.06□□□□□ -0.8
LDLR-210ENST00000559340 RNPC3Q96LT9 517 aaKnown RBP10.06□□□□□ -0.8
LDLR-210ENST00000559340 CEP63Q96MT8 703 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 RPS6KC1Q96S38 1066 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 ZBED2Q9BTP6 218 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 EIF2AQ9BY44 585 aaKnown RBP10.06□□□□□ -0.8
LDLR-210ENST00000559340 OSBPL7Q9BZF2 842 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 HSPBP1Q9NZL4 362 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 CTNND2Q9UQB3 1225 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 IPPQ9Y573 584 aa10.06□□□□□ -0.8
LDLR-210ENST00000559340 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.05□□□□□ -0.8
LDLR-210ENST00000559340 SYCE3A1L190 88 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 TTLL13PA6NNM8 815 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 MAPK13O15264 365 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 IL18RAPO95256 599 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 EDN1P05305 212 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 EPB41P11171 864 aaKnown RBP10.05□□□□□ -0.8
LDLR-210ENST00000559340 KRT13P13646 458 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 PRKCSHP14314 528 aaPredicted RBP10.05□□□□□ -0.8
LDLR-210ENST00000559340 BMP6P22004 513 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 NR2F2P24468 414 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 PSMC2P35998 433 aaKnown RBP10.05□□□□□ -0.8
LDLR-210ENST00000559340 CYP2J2P51589 502 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 TPM4P67936 248 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 ANKRD40Q6AI12 368 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 SLC39A4Q6P5W5 647 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 FILIP1Q7Z7B0 1213 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 CDR2LQ86X02 465 aaPredicted RBP10.05□□□□□ -0.8
LDLR-210ENST00000559340 NT5DC4Q86YG4 428 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 FAM114A1Q8IWE2 563 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 DEFB123Q8N688 67 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 RNF169Q8NCN4 708 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 CACTINQ8WUQ7 758 aaKnown RBP10.05□□□□□ -0.8
LDLR-210ENST00000559340 TOP1MTQ969P6 601 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 MKNK1Q9BUB5 465 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 APOL6Q9BWW8 343 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 MRPL9Q9BYD2 267 aaKnown RBP10.05□□□□□ -0.8
LDLR-210ENST00000559340 TMEM117Q9H0C3 514 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 SEMA6BQ9H3T3 888 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 PCIF1Q9H4Z3 704 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 ASB7Q9H672 318 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 RSAD1Q9HA92 442 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 METTL14Q9HCE5 456 aaKnown RBP10.05□□□□□ -0.8
LDLR-210ENST00000559340 DMAC2Q9NW81 257 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 SNTG2Q9NY99 539 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 USP20Q9Y2K6 914 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 STXBP5LQ9Y2K9 1186 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 PTPRSQ13332 1948 aa10.05□□□□□ -0.8
LDLR-210ENST00000559340 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 BECN2A8MW95 431 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 ABLIM1O14639 778 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 UPP2O95045 317 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 CD44P16070 742 aaKnown RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 ATP2A2P16615 1042 aaKnown RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 IBSPP21815 317 aaPredicted RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 ADSSP30520 456 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 EPHB4P54760 987 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 PPP2R3AQ06190 1150 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 ENPEPQ07075 957 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 SHHQ15465 462 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 DPCR1Q3MIW9 517 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 ZCWPW2Q504Y3 356 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 SPATA1Q5VX52 437 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 CEP135Q66GS9 1140 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.04□□□□□ -0.8
LDLR-210ENST00000559340 ZNF598Q86UK7 904 aaKnown RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 CSGALNACT2Q8N6G5 542 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 SMG8Q8ND04 991 aaKnown RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 ANKRD20A12PQ8NF67 263 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 ENOX1Q8TC92 643 aaKnown RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 LINC01599Q8WXQ3 324 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 VWCEQ96DN2 955 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 FBXL18Q96ME1 805 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 FAM193BQ96PV7 902 aaPredicted RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 FNBP1Q96RU3 617 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 BPIFA3Q9BQP9 254 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 CBWD1Q9BRT8 395 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 FAM213AQ9BRX8 229 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 SLC38A7Q9NVC3 462 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 MAGEC2Q9UBF1 373 aaPredicted RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 CPSF3Q9UKF6 684 aaKnown RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 DERAQ9Y315 318 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 R3HCC1Q9Y3T6 440 aaKnown RBP10.04□□□□□ -0.8
LDLR-210ENST00000559340 INSL6Q9Y581 213 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 GBF1Q92538 1859 aa10.04□□□□□ -0.8
LDLR-210ENST00000559340 RANBP2P49792 3224 aaKnown RBP10.03□□□□□ -0.8
LDLR-210ENST00000559340 SLC16A3O15427 465 aaKnown RBP10.03□□□□□ -0.8
LDLR-210ENST00000559340 STX10O60499 249 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 RECQL4O94761 1208 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 THP07101 528 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 TPM2P07951 284 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 ACOT2P49753 483 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 AP3M2P53677 418 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 STX17P56962 302 aa10.03□□□□□ -0.8
LDLR-210ENST00000559340 OSTNP61366 133 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms