RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 RTN1Q16799 776 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 UBXN11Q5T124 520 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 LILRA6Q6PI73 481 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 APOA5Q6Q788 366 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 RSPO2Q6UXX9 243 aaPredicted RBP10.41□□□□□ -0.74
SYNE2-224ENST00000557024 METTL3Q86U44 580 aaKnown RBP10.41□□□□□ -0.74
SYNE2-224ENST00000557024 SGMS1Q86VZ5 419 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 REXO1Q8N1G1 1221 aaKnown RBP10.41□□□□□ -0.74
SYNE2-224ENST00000557024 ZNF713Q8N859 430 aaPredicted RBP10.41□□□□□ -0.74
SYNE2-224ENST00000557024 ITFG1Q8TB96 612 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 ZFP42Q96MM3 310 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 NIFKQ9BYG3 293 aaKnown RBP10.41□□□□□ -0.74
SYNE2-224ENST00000557024 GPR62Q9BZJ7 368 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 LSG1Q9H089 658 aaKnown RBP10.41□□□□□ -0.74
SYNE2-224ENST00000557024 IFT122Q9HBG6 1241 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 CHST7Q9NS84 486 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 RBM28Q9NW13 759 aaKnown RBP10.41□□□□□ -0.74
SYNE2-224ENST00000557024 POLIQ9UNA4 740 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 ADGRG1Q9Y653 693 aa10.41□□□□□ -0.74
SYNE2-224ENST00000557024 DDX11L8A8MPP1 907 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 NCAM2O15394 837 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 MSH4O15457 936 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 CCL16O15467 120 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 MAFO75444 373 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-224ENST00000557024 STBD1O95210 358 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 C1RP00736 705 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 ITGA4P13612 1032 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 NCLP19338 710 aaKnown RBP10.4□□□□□ -0.74
SYNE2-224ENST00000557024 HOXA11P31270 313 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-224ENST00000557024 SFNP31947 248 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 CIITAP33076 1130 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 CLCN1P35523 988 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 MLH1P40692 756 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 RPS9P46781 194 aaKnown RBP10.4□□□□□ -0.74
SYNE2-224ENST00000557024 SCNN1GP51170 649 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 JAK3P52333 1124 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 DSC1Q08554 894 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 MMRN1Q13201 1228 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 XKR3Q5GH77 459 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 LRCH2Q5VUJ6 765 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 LAIR1Q6GTX8 287 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 FUT10Q6P4F1 479 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 PRSS55Q6UWB4 352 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-224ENST00000557024 PRR23BQ6ZRT6 265 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 SMG8Q8ND04 991 aaKnown RBP10.4□□□□□ -0.74
SYNE2-224ENST00000557024 RABGGTAQ92696 567 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 GAD1Q99259 594 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 NELL2Q99435 816 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 RIT2Q99578 217 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 PHF20Q9BVI0 1012 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 TMUB1Q9BVT8 246 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 FAM126AQ9BYI3 521 aaPredicted RBP10.4□□□□□ -0.74
SYNE2-224ENST00000557024 C22orf23Q9BZE7 217 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 MINDY3Q9H8M7 445 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.4□□□□□ -0.74
SYNE2-224ENST00000557024 FNIP2Q9P278 1114 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 ANGPTL2Q9UKU9 493 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 BRPF3Q9ULD4 1205 aa10.4□□□□□ -0.74
SYNE2-224ENST00000557024 FRYQ5TBA9 3013 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 GOLGA8AA7E2F4 631 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 GOLGA8BA8MQT2 603 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 SLC27A2O14975 620 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 GDF9O60383 454 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 NR1I2O75469 434 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 RETP07949 1114 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 SRGAP2CP0DJJ0 459 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 TDGF1P13385 188 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 FZD5Q13467 585 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 USP41Q3LFD5 358 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 PPM1LQ5SGD2 360 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 LIN9Q5TKA1 542 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 PLA2G4FQ68DD2 849 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 ZNF852Q6ZMS4 543 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 PRR23CQ6ZRP0 262 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 MIER3Q7Z3K6 550 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 CELF5Q8N6W0 485 aaKnown RBP10.39□□□□□ -0.75
SYNE2-224ENST00000557024 ING5Q8WYH8 240 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 SLC5A5Q92911 643 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 MBOAT7Q96N66 472 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 COLEC11Q9BWP8 271 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 APOL6Q9BWW8 343 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 TEKT3Q9BXF9 490 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 EIF2AQ9BY44 585 aaKnown RBP10.39□□□□□ -0.75
SYNE2-224ENST00000557024 C6orf50Q9HD87 102 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 UBN1Q9NPG3 1134 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 HEBP1Q9NRV9 189 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 SEMA4GQ9NTN9 838 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 MIOSQ9NXC5 875 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 FBXW11Q9UKB1 542 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 NDRG2Q9UN36 371 aaKnown RBP10.39□□□□□ -0.75
SYNE2-224ENST00000557024 HES2Q9Y543 173 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 IPPQ9Y573 584 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 COL4A3BPQ9Y5P4 624 aa10.39□□□□□ -0.75
SYNE2-224ENST00000557024 CEP295Q9C0D2 2601 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 DOCK8Q8NF50 2099 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 ESYT2A0FGR8 921 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 ZBTB43O43298 467 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 C8AP07357 584 aa10.38□□□□□ -0.75
SYNE2-224ENST00000557024 HNRNPA1P09651 372 aaKnown RBP eCLIP10.38□□□□□ -0.75
SYNE2-224ENST00000557024 CDC27P30260 824 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms