RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ZNF233A6NK53 670 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 SOX1O00570 391 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 CLSTN1O94985 981 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 CYLC1P35663 651 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 PEX19P40855 299 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 SCTRP47872 440 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 SLC7A5Q01650 507 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 GLE1Q53GS7 698 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 MARCH8Q5T0T0 291 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 ARL6IP4Q66PJ3 421 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 CDCA2Q69YH5 1023 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 C1orf131Q8NDD1 294 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 SPATA4Q8NEY3 305 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 MICAL1Q8TDZ2 1067 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 TRAPPC12Q8WVT3 735 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 HAS1Q92839 578 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 ATP6V1G3Q96LB4 118 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 OSBPL7Q9BZF2 842 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 UNC45AQ9H3U1 944 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 PPANQ9NQ55 473 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 CPSF2Q9P2I0 782 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 SNX12Q9UMY4 172 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 TFR2Q9UP52 801 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 CTNND2Q9UQB3 1225 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 LUC7L2Q9Y383 392 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 SPTBN5Q9NRC6 3674 aaKnown RBP8.28□□□□□ -1.08
LIMA1-216ENST00000552909 UNC80Q8N2C7 3258 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 EMSYQ7Z589 1322 aa8.28□□□□□ -1.08
LIMA1-216ENST00000552909 XIRP2A4UGR9 3374 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 LRRC10BA6NIK2 292 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 PPP1R3GB7ZBB8 358 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 PES1O00541 588 aaKnown RBP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 BACH1O14867 736 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 GAS7O60861 476 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 SNUPNO95149 360 aaKnown RBP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 ATP6V1G2O95670 118 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 IQCF3P0C7M6 154 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 CKBP12277 381 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 VCANP13611 3396 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 INSRRP14616 1297 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 TXKP42681 527 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 MATR3P43243 847 aaKnown RBP eCLIP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 IGBP1P78318 339 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 CALCRLQ16602 461 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 TRIM71Q2Q1W2 868 aaKnown RBP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 LACTB2Q53H82 288 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 ZNF746Q6NUN9 644 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 MOXD1Q6UVY6 613 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 B3GNT9Q6UX72 402 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 ZNF365Q70YC5 407 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 PLPPR4Q7Z2D5 763 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 DEFB128Q7Z7B8 93 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 SERINC5Q86VE9 423 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 CREG2Q8IUH2 290 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 CD302Q8IX05 232 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 IQCKQ8N0W5 287 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 TMEM199Q8N511 208 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 P3H4Q92791 437 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 SYMPKQ92797 1274 aaKnown RBP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 ITFG2Q969R8 447 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 CCDC47Q96A33 483 aaKnown RBP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 LRCH3Q96II8 777 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 RIT2Q99578 217 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 DNAJC7Q99615 494 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 AZI2Q9H6S1 392 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 NOD2Q9HC29 1040 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 KCNMB3Q9NPA1 279 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 TAB2Q9NYJ8 693 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 PCDHA10Q9Y5I2 948 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 TTC26A0AVF1 554 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 MACROD2A1Z1Q3 448 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 GMNCA6NCL1 334 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 EML1O00423 815 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 LAD1O00515 517 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 ZNF862O60290 1169 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 MARCH6O60337 910 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 DNAJC8O75937 253 aaPredicted RBP8.27□□□□□ -1.09
LIMA1-216ENST00000552909 OR52Z1P0C646 297 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 TECP42680 631 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 AFMP43652 599 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 KRT76Q01546 638 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 UBXN1Q04323 297 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 PTK7Q13308 1070 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 MBTPS1Q14703 1052 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 KCNB1Q14721 858 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 SLMAPQ14BN4 828 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 GRIK4Q16099 956 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 UGCGQ16739 394 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 ACCSLQ4AC99 568 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 TMEM240Q5SV17 173 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 ZNF618Q5T7W0 954 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 CCDC181Q5TID7 509 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 HAUS3Q68CZ6 603 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 C8orf74Q6P047 294 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 PDXDC2PQ6P474 469 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 TRAF7Q6Q0C0 670 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 RUFY4Q6ZNE9 571 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 IFT20Q8IY31 132 aa8.27□□□□□ -1.09
LIMA1-216ENST00000552909 SMYD4Q8IYR2 804 aaPredicted RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms