RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 RASSF9O75901 435 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 ALAS1P13196 640 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 MUTP22033 750 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 RFX1P22670 979 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 CAP2P40123 477 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 MMP13P45452 471 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 QARSP47897 775 aaKnown RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 HSD17B4P51659 736 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 DRG2P55039 364 aaKnown RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 GTF2BQ00403 316 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 CETN1Q12798 172 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 LRRC14Q15048 493 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 TRIP13Q15645 432 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 LONRF1Q17RB8 773 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 GKAP1Q5VSY0 366 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 LRRC34Q8IZ02 419 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 TAS1R2Q8TE23 839 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 CLEC4DQ8WXI8 215 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 TAAR1Q96RJ0 339 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 FAM118BQ9BPY3 351 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 EHMT1Q9H9B1 1298 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 AGO4Q9HCK5 861 aaKnown RBP8.05□□□□□ -1.12
LIMA1-213ENST00000552720 KLC4Q9NSK0 619 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 GGT7Q9UJ14 662 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 GGA2Q9UJY4 613 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 COL4A5P29400 1685 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 PFASO15067 1338 aa8.05□□□□□ -1.12
LIMA1-213ENST00000552720 O00370 1275 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 ACSL3O95573 720 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 MYCLP12524 364 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 SSTR3P32745 418 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 CHKAP35790 457 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 SCTRP47872 440 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 SMTNP53814 917 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 MTMR1Q13613 665 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 AUHQ13825 339 aaKnown RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 MYBPC2Q14324 1141 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 PPP2R5EQ16537 467 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 RNF207Q6ZRF8 634 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 HELQQ8TDG4 1101 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 FAM151AQ8WW52 585 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 BSNDQ8WZ55 320 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 CCT6BQ92526 530 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 SHC3Q92529 594 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 ART4Q93070 314 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 PGM2Q96G03 612 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 RPS6KC1Q96S38 1066 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 WNT8AQ9H1J5 351 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 RAVER2Q9HCJ3 691 aaKnown RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 MLXIPLQ9NP71 852 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 AAASQ9NRG9 546 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 CHST7Q9NS84 486 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 TMOD2Q9NZR1 351 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 CTNNAL1Q9UBT7 734 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 RGPD3A6NKT7 1758 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 RGPD4Q7Z3J3 1758 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 COL2A1P02458 1487 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 GRIN3BO60391 1043 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 SORBS3O60504 671 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 CCNE2O96020 404 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 CNGA1P29973 690 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 VPS41P49754 854 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 KRT17Q04695 432 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 PPP1R7Q15435 360 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 XKR9Q5GH70 373 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 SPDYCQ5MJ68 293 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 LMBRD2Q68DH5 695 aaPredicted RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 SLC39A4Q6P5W5 647 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 C12orf56Q8IXR9 622 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 MGARPQ8TDB4 240 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 PARD3BQ8TEW8 1205 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 C7orf43Q8WVR3 580 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 PSPC1Q8WXF1 523 aaKnown RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 DDX1Q92499 740 aaKnown RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 HVCN1Q96D96 273 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 CEP89Q96ST8 783 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 ZNF341Q9BYN7 854 aa8.04□□□□□ -1.12
LIMA1-213ENST00000552720 CDC42EP4Q9H3Q1 356 aaKnown RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 CNOT10Q9H9A5 744 aaKnown RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 MTRF1LQ9UGC7 380 aaKnown RBP8.04□□□□□ -1.12
LIMA1-213ENST00000552720 DENND3A2RUS2 1198 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 PODXLO00592 558 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 RASGRF2O14827 1237 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 P4HA2O15460 535 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 MTA2O94776 668 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 APBA3O96018 575 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 CYP1A2P05177 515 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 ICAM1P05362 532 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 GZMAP12544 262 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 KRT5P13647 590 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 PTGER2P43116 358 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 NCKAP1LP55160 1127 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 CDR2Q01850 454 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 TRAF1Q13077 416 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 TCEAL1Q15170 157 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 DLGAP5Q15398 846 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 CYP1B1Q16678 543 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 PRUNE1Q86TP1 453 aa8.03□□□□□ -1.12
LIMA1-213ENST00000552720 EXOC3L1Q86VI1 746 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms