RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 EPB41P11171 864 aaKnown RBP10.43□□□□□ -0.74
LIMA1-211ENST00000552338 ZSCAN20P17040 1043 aaPredicted RBP10.43□□□□□ -0.74
LIMA1-211ENST00000552338 FGFR4P22455 802 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 CD52P31358 61 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 GTF2H1P32780 548 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 BFSP1Q12934 665 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 PAK2Q13177 524 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 SNRNP35Q16560 246 aaKnown RBP10.43□□□□□ -0.74
LIMA1-211ENST00000552338 TPD52L1Q16890 204 aaPredicted RBP10.43□□□□□ -0.74
LIMA1-211ENST00000552338 ZNF568Q3ZCX4 644 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 MIIPQ5JXC2 388 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 ZNF598Q86UK7 904 aaKnown RBP10.43□□□□□ -0.74
LIMA1-211ENST00000552338 BRSK2Q8IWQ3 736 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 FAM186BQ8IYM0 893 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 SMG8Q8ND04 991 aaKnown RBP10.43□□□□□ -0.74
LIMA1-211ENST00000552338 CPB2Q96IY4 423 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 CNOT6LQ96LI5 555 aaKnown RBP10.43□□□□□ -0.74
LIMA1-211ENST00000552338 PPP1R16BQ96T49 567 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 MSTO1Q9BUK6 570 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 FAM105AQ9NUU6 356 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 PIN4Q9Y237 131 aaKnown RBP10.43□□□□□ -0.74
LIMA1-211ENST00000552338 GINS2Q9Y248 185 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 DERAQ9Y315 318 aa10.43□□□□□ -0.74
LIMA1-211ENST00000552338 A0A1B0GTH6 734 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 GOLGA6L3A6NEY3 463 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 KCNJ18B7U540 433 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 MGEA5O60502 916 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 EFCAB14O75071 495 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 ITGB8P26012 769 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 CYP2C18P33260 490 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 MRE11P49959 708 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 AP3M2P53677 418 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 CYP24A1Q07973 514 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 NFX1Q12986 1120 aaKnown RBP10.42□□□□□ -0.74
LIMA1-211ENST00000552338 KCNJ12Q14500 433 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 NR1I3Q14994 352 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 KRT31Q15323 416 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 ZBTB6Q15916 424 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 MAN2A1Q16706 1144 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 SLC10A6Q3KNW5 377 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 C1orf220Q5T0J3 134 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 CNKSR3Q6P9H4 555 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 C15orf39Q6ZRI6 1047 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 SLC24A5Q71RS6 500 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 USP37Q86T82 979 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 CBWD2Q8IUF1 395 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 RPUSD2Q8IZ73 545 aaKnown RBP10.42□□□□□ -0.74
LIMA1-211ENST00000552338 TMEM199Q8N511 208 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 ZSWIM2Q8NEG5 633 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 DBF4BQ8NFT6 615 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 SEPT8Q92599 483 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 SLC35C1Q96A29 364 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 TUBGCP2Q9BSJ2 902 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 TCHPQ9BT92 498 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 EIF2AQ9BY44 585 aaKnown RBP10.42□□□□□ -0.74
LIMA1-211ENST00000552338 PCIF1Q9H4Z3 704 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 UBN1Q9NPG3 1134 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 ARMCX3Q9UH62 379 aaPredicted RBP10.42□□□□□ -0.74
LIMA1-211ENST00000552338 GIT1Q9Y2X7 761 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 COQ4Q9Y3A0 265 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 DNAH12Q6ZR08 3092 aa10.42□□□□□ -0.74
LIMA1-211ENST00000552338 FNDC1Q4ZHG4 1894 aaPredicted RBP10.42□□□□□ -0.74
LIMA1-211ENST00000552338 ABHD14A-ACY1A0A1B0GW23 586 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 ENPP3O14638 875 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 MEFVO15553 781 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-211ENST00000552338 IL18RAPO95256 599 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 STAG3L1P0CL83 205 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 ATP1A3P13637 1013 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 KCNE1P15382 129 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 ATF7P17544 494 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-211ENST00000552338 CYP2J2P51589 502 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 VAMP7P51809 220 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 FANCCQ00597 558 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 CEP135Q66GS9 1140 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 RNF214Q8ND24 703 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 ANKRD20A12PQ8NF67 263 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 PLEKHO2Q8TD55 490 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 LINC01599Q8WXQ3 324 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 ACAP3Q96P50 834 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 ERGIC2Q96RQ1 377 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 ADAM2Q99965 735 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 FAM213AQ9BRX8 229 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 CCDC94Q9BW85 323 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-211ENST00000552338 RPF1Q9H9Y2 349 aaKnown RBP10.41□□□□□ -0.74
LIMA1-211ENST00000552338 GRPEL1Q9HAV7 217 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 RTN4Q9NQC3 1192 aaKnown RBP10.41□□□□□ -0.74
LIMA1-211ENST00000552338 CNTN3Q9P232 1028 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 MAGEC2Q9UBF1 373 aaPredicted RBP10.41□□□□□ -0.74
LIMA1-211ENST00000552338 C2CD2Q9Y426 696 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 IPPQ9Y573 584 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 PCDHB2Q9Y5E7 798 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 PTPRSQ13332 1948 aa10.41□□□□□ -0.74
LIMA1-211ENST00000552338 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 A0A1W2PQC6 194 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 AP5Z1O43299 807 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 STX10O60499 249 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 BAIAP3O94812 1187 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 NPTXRO95502 500 aa10.4□□□□□ -0.74
LIMA1-211ENST00000552338 C4BPAP04003 597 aaKnown RBP10.4□□□□□ -0.74
LIMA1-211ENST00000552338 RAG1P15918 1043 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms