RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NXPE3Q969Y0 559 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 ABHD17AQ96GS6 310 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 CHAMP1Q96JM3 812 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 SRRTQ9BXP5 876 aaKnown RBP7.49□□□□□ -1.21
LIMA1-204ENST00000549064 LRRCC1Q9C099 1032 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 BHLHE41Q9C0J9 482 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-204ENST00000549064 FAM49AQ9H0Q0 323 aaPredicted RBP7.49□□□□□ -1.21
LIMA1-204ENST00000549064 TMX1Q9H3N1 280 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 CWH43Q9H720 699 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 VAT1LQ9HCJ6 419 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 AAASQ9NRG9 546 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 TCP11L1Q9NUJ3 509 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 TYW1Q9NV66 732 aaKnown RBP7.49□□□□□ -1.21
LIMA1-204ENST00000549064 SIRPGQ9P1W8 387 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 TUBE1Q9UJT0 475 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 ANAPC4Q9UJX5 808 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 DBR1Q9UK59 544 aaKnown RBP7.49□□□□□ -1.21
LIMA1-204ENST00000549064 PADI3Q9ULW8 664 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 PPT2Q9UMR5 302 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 NRCAMQ92823 1304 aa7.49□□□□□ -1.21
LIMA1-204ENST00000549064 KRBA1A5PL33 1030 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 J3QW42 95 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 DHX16O60231 1041 aaKnown RBP7.48□□□□□ -1.21
LIMA1-204ENST00000549064 MGEA5O60502 916 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 MAP3K6O95382 1288 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 EOMESO95936 686 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 AVPP01185 164 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 DCNP07585 359 aaKnown RBP7.48□□□□□ -1.21
LIMA1-204ENST00000549064 TGFB3P10600 412 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 MARK3P27448 753 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 CCND2P30279 289 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 IGBP1P78318 339 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 ATP11AP98196 1134 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 ITIH3Q06033 890 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 PPFIA1Q13136 1202 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 TDGQ13569 410 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 GRIK4Q16099 956 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 MARCH8Q5T0T0 291 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 GPATCH4Q5T3I0 446 aaKnown RBP7.48□□□□□ -1.21
LIMA1-204ENST00000549064 METTL7BQ6UX53 244 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 STOX1Q6ZVD7 989 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 RSPH3Q86UC2 560 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 FTHL17Q9BXU8 183 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 MAF1Q9H063 256 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 RASSF4Q9H2L5 321 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 JMJD4Q9H9V9 463 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 ZFYVE1Q9HBF4 777 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 CYP26B1Q9NR63 512 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 SNTG2Q9NY99 539 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 ZNF215Q9UL58 517 aaPredicted RBP7.48□□□□□ -1.21
LIMA1-204ENST00000549064 DUSP12Q9UNI6 340 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 PCDHB7Q9Y5E2 793 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 PCDHB5Q9Y5E4 795 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 MIA3Q5JRA6 1907 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 PATJQ8NI35 1801 aa7.48□□□□□ -1.21
LIMA1-204ENST00000549064 COL4A3Q01955 1670 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 MBLAC1A4D2B0 266 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 PDE2AO00408 941 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 SMAD7O15105 426 aaKnown RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 PPP1R11O60927 126 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 CLASP2O75122 1294 aaKnown RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 F13A1P00488 732 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 ADRB1P08588 477 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 FGFR1P11362 822 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 CA8P35219 290 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 SARSP49591 514 aaKnown RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 NRLP54845 237 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 HAND2P61296 217 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 MRPS9P82933 396 aaKnown RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 KIAA1841Q6NSI8 718 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 ZC3H14Q6PJT7 736 aaKnown RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 FCHSD1Q86WN1 690 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 TMEM102Q8N9M5 508 aaPredicted RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 DEPDC7Q96QD5 511 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 TBC1D17Q9HA65 648 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 KCNK12Q9HB15 430 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 NDFIP2Q9NV92 336 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 RTEL1Q9NZ71 1219 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 NCDNQ9UBB6 729 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 CA14Q9ULX7 337 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 LZTS1Q9Y250 596 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 R3HCC1Q9Y3T6 440 aaKnown RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 TRPV2Q9Y5S1 764 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 BAZ2BQ9UIF8 2168 aaKnown RBP7.47□□□□□ -1.21
LIMA1-204ENST00000549064 IGSF9BQ9UPX0 1349 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 FAM208BQ5VWN6 2430 aa7.47□□□□□ -1.21
LIMA1-204ENST00000549064 WDFY3Q8IZQ1 3526 aa7.46□□□□□ -1.21
LIMA1-204ENST00000549064 EVPLQ92817 2033 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 FAM221BA6H8Z2 402 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 C2orf71A6NGG8 1288 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 ZBTB42B2RXF5 422 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 EPCAMP16422 314 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 LAG3P18627 525 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 TCF7P36402 384 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-204ENST00000549064 GHRHRQ02643 423 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 PTSQ03393 145 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 COL9A3Q14050 684 aaPredicted RBP7.46□□□□□ -1.22
LIMA1-204ENST00000549064 NEDD9Q14511 834 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 DBN1Q16643 649 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 ATAT1Q5SQI0 421 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms