RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 LSM12Q3MHD2 195 aaKnown RBP8.13□□□□□ -1.11
YBX3-210ENST00000540975 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.13□□□□□ -1.11
YBX3-210ENST00000540975 OR2I1PQ8NGU4 316 aa8.13□□□□□ -1.11
YBX3-210ENST00000540975 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.13□□□□□ -1.11
YBX3-210ENST00000540975 STON2Q8WXE9 905 aa8.13□□□□□ -1.11
YBX3-210ENST00000540975 UHRF1Q96T88 793 aaPredicted RBP8.13□□□□□ -1.11
YBX3-210ENST00000540975 HOMER2Q9NSB8 354 aa8.13□□□□□ -1.11
YBX3-210ENST00000540975 SIK3Q9Y2K2 1263 aa8.13□□□□□ -1.11
YBX3-210ENST00000540975 ATRNL1Q5VV63 1379 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 GRXCR1A8MXD5 290 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 NPIPB8E9PQR5 432 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 NDUFS2O75306 463 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 SLC6A9P48067 706 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 PTTG1IPP53801 180 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 RABL3Q5HYI8 236 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 DRICH1Q6PGQ1 229 aaPredicted RBP8.12□□□□□ -1.11
YBX3-210ENST00000540975 FBXO18Q8NFZ0 1043 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 SLC35B2Q8TB61 432 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 NRG4Q8WWG1 115 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 DPF2Q92785 391 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 ASPSCR1Q9BZE9 553 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 INTUQ9ULD6 942 aa8.12□□□□□ -1.11
YBX3-210ENST00000540975 ENDOD1O94919 500 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 ALOX15P16050 662 aaPredicted RBP8.11□□□□□ -1.11
YBX3-210ENST00000540975 C5AR1P21730 350 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 WASP42768 502 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 KRT85P78386 507 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 SP140Q13342 867 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 TUBA3CQ13748 450 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 IGFL4Q6B9Z1 124 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 EFCAB12Q6NXP0 572 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 TUBA3EQ6PEY2 450 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 NDC1Q9BTX1 674 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 TUBD1Q9UJT1 453 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 MRFAP1Q9Y605 127 aa8.11□□□□□ -1.11
YBX3-210ENST00000540975 CXorf49A8MYA2 514 aaPredicted RBP8.1□□□□□ -1.11
YBX3-210ENST00000540975 FAM20BO75063 409 aa8.1□□□□□ -1.11
YBX3-210ENST00000540975 IL2RBP14784 551 aa8.1□□□□□ -1.11
YBX3-210ENST00000540975 GUCY1A2P33402 732 aa8.1□□□□□ -1.11
YBX3-210ENST00000540975 PTPN21Q16825 1174 aa8.1□□□□□ -1.11
YBX3-210ENST00000540975 FNDC7Q5VTL7 733 aa8.1□□□□□ -1.11
YBX3-210ENST00000540975 RPUSD2Q8IZ73 545 aaKnown RBP8.1□□□□□ -1.11
YBX3-210ENST00000540975 CYFIP2Q96F07 1278 aa8.1□□□□□ -1.11
YBX3-210ENST00000540975 KRTAP4-11Q9BYQ6 195 aa8.1□□□□□ -1.11
YBX3-210ENST00000540975 LDAHQ9H6V9 325 aa8.1□□□□□ -1.11
YBX3-210ENST00000540975 SORCS3Q9UPU3 1222 aa8.1□□□□□ -1.11
YBX3-210ENST00000540975 SPEF1Q9Y4P9 236 aa8.1□□□□□ -1.11
YBX3-210ENST00000540975 PNPLA7Q6ZV29 1317 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 FAM171A2A8MVW0 826 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 PJA2O43164 708 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 XPOTO43592 962 aaKnown RBP8.09□□□□□ -1.11
YBX3-210ENST00000540975 NARSO43776 548 aaKnown RBP8.09□□□□□ -1.11
YBX3-210ENST00000540975 FZD7O75084 574 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 PEX11BO96011 259 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 FSHBP01225 129 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 CLRN1P58418 232 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 BRDTQ58F21 947 aaPredicted RBP8.09□□□□□ -1.11
YBX3-210ENST00000540975 SYT12Q8IV01 421 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 TFAP2CQ92754 450 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 SLC13A1Q9BZW2 595 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 SENP6Q9GZR1 1112 aaPredicted RBP8.09□□□□□ -1.11
YBX3-210ENST00000540975 LANCL2Q9NS86 450 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 POGKQ9P215 609 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 HS3ST3A1Q9Y663 406 aa8.09□□□□□ -1.11
YBX3-210ENST00000540975 LEFTY2O00292 366 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 APOBEC3AP31941 199 aaPredicted RBP8.08□□□□□ -1.12
YBX3-210ENST00000540975 ACVRL1P37023 503 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 ODF1Q14990 250 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 AFMIDQ63HM1 303 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 PNMA8AQ86V59 439 aaPredicted RBP8.08□□□□□ -1.12
YBX3-210ENST00000540975 ZFP28Q8NHY6 868 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 CPT1CQ8TCG5 803 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 TEKT5Q96M29 485 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 C7orf25Q9BPX7 421 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 TMPRSS5Q9H3S3 457 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 SLC2A4RGQ9NR83 387 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 MOCS1Q9NZB8 636 aa8.08□□□□□ -1.12
YBX3-210ENST00000540975 SAP30BPQ9UHR5 308 aaKnown RBP8.08□□□□□ -1.12
YBX3-210ENST00000540975 EIF2B4Q9UI10 523 aaKnown RBP8.08□□□□□ -1.12
YBX3-210ENST00000540975 AJAP1Q9UKB5 411 aaPredicted RBP8.08□□□□□ -1.12
YBX3-210ENST00000540975 RECQL4O94761 1208 aa8.07□□□□□ -1.12
YBX3-210ENST00000540975 SCAF4O95104 1147 aaKnown RBP8.07□□□□□ -1.12
YBX3-210ENST00000540975 SNRPA1P09661 255 aaKnown RBP8.07□□□□□ -1.12
YBX3-210ENST00000540975 CCND1P24385 295 aa8.07□□□□□ -1.12
YBX3-210ENST00000540975 MGAT1P26572 445 aa8.07□□□□□ -1.12
YBX3-210ENST00000540975 EFCAB2Q5VUJ9 269 aa8.07□□□□□ -1.12
YBX3-210ENST00000540975 RNF169Q8NCN4 708 aa8.07□□□□□ -1.12
YBX3-210ENST00000540975 OR10H5Q8NGA6 315 aa8.07□□□□□ -1.12
YBX3-210ENST00000540975 CCHCR1Q8TD31 782 aa8.07□□□□□ -1.12
YBX3-210ENST00000540975 MRI1Q9BV20 369 aa8.07□□□□□ -1.12
YBX3-210ENST00000540975 KRTAP4-2Q9BYR5 136 aa8.07□□□□□ -1.12
YBX3-210ENST00000540975 TMEM140Q9NV12 185 aa8.07□□□□□ -1.12
YBX3-210ENST00000540975 AHRRA9YTQ3 701 aa8.06□□□□□ -1.12
YBX3-210ENST00000540975 TRIM24O15164 1050 aa8.06□□□□□ -1.12
YBX3-210ENST00000540975 AMY1AP04745 511 aa8.06□□□□□ -1.12
YBX3-210ENST00000540975 FPR1P21462 350 aa8.06□□□□□ -1.12
YBX3-210ENST00000540975 PCSK1P29120 753 aa8.06□□□□□ -1.12
YBX3-210ENST00000540975 NHLH2Q02577 135 aa8.06□□□□□ -1.12
YBX3-210ENST00000540975 RRP12Q5JTH9 1297 aaKnown RBP8.06□□□□□ -1.12
YBX3-210ENST00000540975 ATXN7L2Q5T6C5 722 aaPredicted RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms