RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 ARHGEF19Q8IW93 802 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 MSL3Q8N5Y2 521 aaKnown RBP11.55□□□□□ -0.56
CLIP1-213ENST00000540338 DNERQ8NFT8 737 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 SLC30A5Q8TAD4 765 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 DMAC2Q9NW81 257 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 GLI1P08151 1106 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 P4HA1P13674 534 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 POLR2BP30876 1174 aaKnown RBP11.55□□□□□ -0.56
CLIP1-213ENST00000540338 GBP2P32456 591 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-213ENST00000540338 CPLX4Q7Z7G2 160 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 C12orf56Q8IXR9 622 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 THNSL1Q8IYQ7 743 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 TAS1R2Q8TE23 839 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 PARD3BQ8TEW8 1205 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 ISCUQ9H1K1 167 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 CYP39A1Q9NYL5 469 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 RIPK3Q9Y572 518 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 ZNF536O15090 1300 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 HMGB1P1B2RPK0 211 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-213ENST00000540338 ANKRD63C9JTQ0 380 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 TTI1O43156 1089 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 HLA-DRAP01903 254 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 CD58P19256 250 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 ADCY8P40145 1251 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 OSTNP61366 133 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 CYP24A1Q07973 514 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 TTC19Q6DKK2 380 aaPredicted RBP11.55□□□□□ -0.56
CLIP1-213ENST00000540338 CEP128Q6ZU80 1094 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 SV2AQ7L0J3 742 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 TMEM161BQ8NDZ6 487 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 PI4K2AQ9BTU6 479 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 TARS2Q9BW92 718 aaKnown RBP11.55□□□□□ -0.56
CLIP1-213ENST00000540338 C2orf40Q9H1Z8 148 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 PCDHB2Q9Y5E7 798 aa11.55□□□□□ -0.56
CLIP1-213ENST00000540338 PHF20L1A8MW92 1017 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 CCNE2O96020 404 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 MYBL1P10243 752 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 COMTP21964 271 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 DHX34Q14147 1143 aaKnown RBP11.54□□□□□ -0.56
CLIP1-213ENST00000540338 TRIM72Q6ZMU5 477 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 SCINQ9Y6U3 715 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 UBR3Q6ZT12 1888 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 RGS16O15492 202 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-213ENST00000540338 NR1D1P20393 614 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 AP3M2P53677 418 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 CDR2Q01850 454 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 PPARDQ03181 441 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 SNX1Q13596 522 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 KIF22Q14807 665 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 TMEM132BQ14DG7 1078 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 PROCA1Q8NCQ7 364 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-213ENST00000540338 CASKIN2Q8WXE0 1202 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 INPP4AQ96PE3 977 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-213ENST00000540338 MMP19Q99542 508 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 C11orf70Q9BRQ4 267 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 NXF1Q9UBU9 619 aaKnown RBP11.54□□□□□ -0.56
CLIP1-213ENST00000540338 GNA15P30679 374 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 VPS41P49754 854 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 NT5DC3Q86UY8 548 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 PASD1Q8IV76 773 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 LNX1Q8TBB1 728 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-213ENST00000540338 AENQ8WTP8 325 aaKnown RBP11.54□□□□□ -0.56
CLIP1-213ENST00000540338 SLC10A4Q96EP9 437 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 SPATA33Q96N06 139 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 GTF3C4Q9UKN8 822 aa11.54□□□□□ -0.56
CLIP1-213ENST00000540338 RPTORQ8N122 1335 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 NFKBIEO00221 500 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ZC3H11AO75152 810 aaKnown RBP eCLIP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 SLC25A27O95847 323 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 CYP11B1P15538 503 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 NAMPTP43490 491 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 NCKAP1LP55160 1127 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 EIF3BP55884 814 aaKnown RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ANO5Q75V66 913 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 FASTKD5Q7L8L6 764 aaKnown RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 RNF149Q8NC42 400 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ADPGKQ9BRR6 497 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 TOPORSQ9NS56 1045 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 GPRC5DQ9NZD1 345 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 DLEC1Q9Y238 1755 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 EGFRP00533 1210 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 MMEP08473 750 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ATP5DP30049 168 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 RHPN2Q8IUC4 686 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 CCDC60Q8IWA6 550 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 DAW1Q8N136 415 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 GPC2Q8N158 579 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 OTUD6BQ8N6M0 293 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 HOMER3Q9NSC5 361 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 CHORDC1Q9UHD1 332 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 PNMA3Q9UL41 463 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 AKT3Q9Y243 479 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 TAF1LQ8IZX4 1826 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 GOLGA6L7A0A1B0GV03 622 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 DHX15O43143 795 aaKnown RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ATMINO43313 823 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ECM2O94769 699 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 NEFHP12036 1026 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ATF2P15336 505 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ATF7P17544 494 aaPredicted RBP11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms