RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 HOXB13Q92826 284 aaPredicted RBP6.26□□□□□ -1.41
CD44-230ENST00000528922 TMEM176AQ96HP8 235 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 OR14A2Q96R54 314 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 ADI1Q9BV57 179 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 NELFAQ9H3P2 528 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 MSL2Q9HCI7 577 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 RCAN3Q9UKA8 241 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 ZFR2Q9UPR6 939 aaKnown RBP6.26□□□□□ -1.41
CD44-230ENST00000528922 DAPK1P53355 1430 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 NCOA1Q15788 1441 aa6.26□□□□□ -1.41
CD44-230ENST00000528922 ANKRD30AQ9BXX3 1397 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 FOXD2O60548 495 aaPredicted RBP6.25□□□□□ -1.41
CD44-230ENST00000528922 STC2O76061 302 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 ABLIM3O94929 683 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 S100BP04271 92 aaPredicted RBP6.25□□□□□ -1.41
CD44-230ENST00000528922 HSPA5P11021 654 aaKnown RBP6.25□□□□□ -1.41
CD44-230ENST00000528922 RPS19P39019 145 aaKnown RBP6.25□□□□□ -1.41
CD44-230ENST00000528922 EPHB1P54762 984 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 DUSP2Q05923 314 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 FOXL1Q12952 345 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 ICAM4Q14773 271 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 GRM7Q14831 915 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 THEMISQ8N1K5 641 aaPredicted RBP6.25□□□□□ -1.41
CD44-230ENST00000528922 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.25□□□□□ -1.41
CD44-230ENST00000528922 RELTQ969Z4 430 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 RTFDC1Q9BY42 306 aaPredicted RBP6.25□□□□□ -1.41
CD44-230ENST00000528922 PLA2G3Q9NZ20 509 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 GPRC5DQ9NZD1 345 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 TRPS1Q9UHF7 1281 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 IP6K2Q9UHH9 426 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 SERPINB13Q9UIV8 391 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 ZBTB21Q9ULJ3 1066 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 PTPRKQ15262 1439 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 STRCQ7RTU9 1775 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 ADGRL2O95490 1459 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 CCDC7Q96M83 1385 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 ANKRD30BQ9BXX2 1392 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 PATE3B3GLJ2 98 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 ADCY6O43306 1168 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 PHF2O75151 1096 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 ITGA10O75578 1167 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 RAD17O75943 681 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 EDNRBP24530 442 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 WASP42768 502 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 NPEPPSP55786 919 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 KIF23Q02241 960 aaPredicted RBP6.25□□□□□ -1.41
CD44-230ENST00000528922 PLP2Q04941 152 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 MGAT2Q10469 447 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 TMEM240Q5SV17 173 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 FAM111BQ6SJ93 734 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 OR5M3Q8NGP4 307 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 ZNF480Q8WV37 535 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 COA7Q96BR5 231 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 WWC2-AS2Q96NR7 200 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 TCF25Q9BQ70 676 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 PRKRIP1Q9H875 184 aaPredicted RBP6.25□□□□□ -1.41
CD44-230ENST00000528922 TCF7L1Q9HCS4 588 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 INTUQ9ULD6 942 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 G3BP2Q9UN86 482 aaKnown RBP6.25□□□□□ -1.41
CD44-230ENST00000528922 LIMCH1Q9UPQ0 1083 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 SIK3Q9Y2K2 1263 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 SLC30A1Q9Y6M5 507 aa6.25□□□□□ -1.41
CD44-230ENST00000528922 KIAA0556O60303 1618 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 TROQ12816 1431 aaPredicted RBP6.24□□□□□ -1.41
CD44-230ENST00000528922 PREX1Q8TCU6 1659 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 SHANK2Q9UPX8 1470 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 WNT10BO00744 389 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 NRP1O14786 923 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 GYPEP15421 78 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 MSX2P35548 267 aaPredicted RBP6.24□□□□□ -1.41
CD44-230ENST00000528922 SLC6A9P48067 706 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 ADKP55263 362 aaKnown RBP6.24□□□□□ -1.41
CD44-230ENST00000528922 PIN1Q13526 163 aaPredicted RBP6.24□□□□□ -1.41
CD44-230ENST00000528922 FAM214AQ32MH5 1076 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 LILRA6Q6PI73 481 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 REPS2Q8NFH8 660 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 Q8TCH9 128 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 JDP2Q8WYK2 163 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 RHOBTB2Q9BYZ6 727 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 CD248Q9HCU0 757 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 SH3BP1Q9Y3L3 701 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 IPPQ9Y573 584 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 EID1Q9Y6B2 187 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 ARHGEF12Q9NZN5 1544 aa6.24□□□□□ -1.41
CD44-230ENST00000528922 PLB1Q6P1J6 1458 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 KIF14Q15058 1648 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 ZMYM3Q14202 1370 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 KDM5BQ9UGL1 1544 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 HTRA2O43464 458 aaPredicted RBP6.23□□□□□ -1.41
CD44-230ENST00000528922 ZNF623O75123 536 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 GASTP01350 101 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 ZSCAN20P17040 1043 aaPredicted RBP6.23□□□□□ -1.41
CD44-230ENST00000528922 ECHS1P30084 290 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 HSPA1LP34931 641 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 CRHR1P34998 444 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 SREBF1P36956 1147 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 MRPL49Q13405 166 aaKnown RBP6.23□□□□□ -1.41
CD44-230ENST00000528922 LCE4AQ5TA78 99 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 FAM180AQ6UWF9 173 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 Q6ZSN1 163 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms