RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 CCDC34Q96HJ3 373 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 ZFP42Q96MM3 310 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 GAD1Q99259 594 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 DUSP9Q99956 384 aaKnown RBP11.77□□□□□ -0.53
NEDD8-205ENST00000527046 PCIF1Q9H4Z3 704 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 CWH43Q9H720 699 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 TYW1Q9NV66 732 aaKnown RBP11.77□□□□□ -0.53
NEDD8-205ENST00000527046 KLK14Q9P0G3 267 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 HOOK1Q9UJC3 728 aaKnown RBP11.77□□□□□ -0.53
NEDD8-205ENST00000527046 EXOC7Q9UPT5 735 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 PCDHB7Q9Y5E2 793 aa11.77□□□□□ -0.53
NEDD8-205ENST00000527046 TTC26A0AVF1 554 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 GOLGA8IPA6NC78 632 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 TRIM49BA6NDI0 452 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 ARL5CA6NH57 179 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 GOLGA8JA6NMD2 632 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 OGTO15294 1046 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 RECQL4O94761 1208 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 DDHD2O94830 711 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 SKIP12755 728 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 ITGA4P13612 1032 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 KCNJ6P48051 423 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 CASP4P49662 377 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 NLRP12P59046 1061 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 SNRPFP62306 86 aaKnown RBP11.76□□□□□ -0.53
NEDD8-205ENST00000527046 NOLC1Q14978 699 aaKnown RBP eCLIP11.76□□□□□ -0.53
NEDD8-205ENST00000527046 DPCR1Q3MIW9 517 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 CCDC183Q5T5S1 534 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 SLFN12LQ6IEE8 588 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 TTI2Q6NXR4 508 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 CAVIN1Q6NZI2 390 aaKnown RBP11.76□□□□□ -0.53
NEDD8-205ENST00000527046 CD300LGQ6UXG3 332 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 ZNF280BQ86YH2 543 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 HELQQ8TDG4 1101 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 SAAL1Q96ER3 474 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 BORCS6Q96GS4 357 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 DHTKD1Q96HY7 919 aaPredicted RBP11.76□□□□□ -0.53
NEDD8-205ENST00000527046 RAD9AQ99638 391 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 TCHPQ9BT92 498 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 MSTO1Q9BUK6 570 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 RSAD1Q9HA92 442 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 HSPBP1Q9NZL4 362 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 ANKFY1Q9P2R3 1169 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 AGO2Q9UKV8 859 aaKnown RBP11.76□□□□□ -0.53
NEDD8-205ENST00000527046 GIT1Q9Y2X7 761 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 PCDHA11Q9Y5I1 949 aa11.76□□□□□ -0.53
NEDD8-205ENST00000527046 PDCD11Q14690 1871 aaKnown RBP11.76□□□□□ -0.53
NEDD8-205ENST00000527046 KIAA1671Q9BY89 1806 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 CLTAP09496 248 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 IBSPP21815 317 aaPredicted RBP11.75□□□□□ -0.53
NEDD8-205ENST00000527046 CCNE1P24864 410 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 MLH1P40692 756 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 SMAD3P84022 425 aaKnown RBP11.75□□□□□ -0.53
NEDD8-205ENST00000527046 SOX4Q06945 474 aaPredicted RBP11.75□□□□□ -0.53
NEDD8-205ENST00000527046 DSC1Q08554 894 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 STXBP4Q6ZWJ1 553 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 CBWD2Q8IUF1 395 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 SYCP3Q8IZU3 236 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 RNF169Q8NCN4 708 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 POMGNT1Q8WZA1 660 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 CCDC47Q96A33 483 aaKnown RBP11.75□□□□□ -0.53
NEDD8-205ENST00000527046 PGBD4Q96DM1 585 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 BICD1Q96G01 975 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 FAM84AQ96KN4 292 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 SNX27Q96L92 541 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 PPP1R10Q96QC0 940 aaKnown RBP11.75□□□□□ -0.53
NEDD8-205ENST00000527046 ADPGKQ9BRR6 497 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 APOL6Q9BWW8 343 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 TMEM117Q9H0C3 514 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 NRDE2Q9H7Z3 1164 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 TBC1D13Q9NVG8 400 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 INSL6Q9Y581 213 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 MRPL42Q9Y6G3 142 aaKnown RBP11.75□□□□□ -0.53
NEDD8-205ENST00000527046 CITO14578 2027 aa11.75□□□□□ -0.53
NEDD8-205ENST00000527046 SMIM28A0A1B0GU29 152 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 LINC01553A4QN01 128 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 LACTBL1A8MY62 500 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 EXTL3O43909 919 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 EFEMP2O95967 443 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 NR3C1P04150 777 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 CXCL8P10145 99 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 HARSP12081 509 aaKnown RBP11.74□□□□□ -0.53
NEDD8-205ENST00000527046 KCNE1P15382 129 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 SCNN1GP51170 649 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 POU5F1Q01860 360 aaKnown RBP11.74□□□□□ -0.53
NEDD8-205ENST00000527046 TAP1Q03518 808 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 SPAG1Q07617 926 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 MYBPC2Q14324 1141 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 C1orf220Q5T0J3 134 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 ARMCX5Q6P1M9 558 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 FOXR2Q6PJQ5 311 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 IRF2BP1Q8IU81 584 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 COLGALT2Q8IYK4 626 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 CMTR2Q8IYT2 770 aaKnown RBP11.74□□□□□ -0.53
NEDD8-205ENST00000527046 GPD1LQ8N335 351 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 CXorf38Q8TB03 319 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 ZNF516Q92618 1163 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 CLP1Q92989 425 aaKnown RBP11.74□□□□□ -0.53
NEDD8-205ENST00000527046 P2RX5Q93086 422 aa11.74□□□□□ -0.53
NEDD8-205ENST00000527046 EEF2KMTQ96G04 330 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms