RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 COBLL1Q53SF7 1204 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 MAP3K21Q5TCX8 1036 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 IZUMO3Q5VZ72 239 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 RSPH3Q86UC2 560 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 SPATA24Q86W54 205 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 CCT6BQ92526 530 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 FAF2Q96CS3 445 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 CFAP36Q96G28 342 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 AP5M1Q9H0R1 490 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 COX16Q9P0S2 106 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 LRRIQ3A6PVS8 624 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 COMTP21964 271 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 ARMCX2Q7L311 632 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 ZNF720Q7Z2F6 126 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 C7orf31Q8N865 590 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 ACER1Q8TDN7 264 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 PPP1R16BQ96T49 567 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 CYP26B1Q9NR63 512 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 PCDHB2Q9Y5E7 798 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 ZNF142P52746 1687 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 PJA2O43164 708 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 LUC7L3O95232 432 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 SRGAP2BP0DMP2 458 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 FGFR4P22455 802 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 PSMC1P62191 440 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 IRX4P78413 519 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 CCDC117Q8IWD4 279 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 SLC30A5Q8TAD4 765 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 CASKIN2Q8WXE0 1202 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 MMP19Q99542 508 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 SENP7Q9BQF6 1050 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 ERP44Q9BS26 406 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 TACO1Q9BSH4 297 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 SCN11AQ9UI33 1791 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 CES2O00748 559 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 CASP4P49662 377 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 MRPS9P82933 396 aaKnown RBP11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 IFRD2Q12894 506 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 MXD4Q14582 209 aaPredicted RBP11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 STAT4Q14765 748 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 SH2D3CQ8N5H7 860 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 SPATA33Q96N06 139 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 EHD2Q9NZN4 543 aa11.45□□□□□ -0.58
LIMCH1-205ENST00000503057 M0QYV0 167 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 AKAP3O75969 853 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 MAPTP10636 758 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 GTF2H1P32780 548 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 HSPA9P38646 679 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 MMP14P50281 582 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 MKRN3Q13064 507 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 GPS1Q13098 491 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 FAM47CQ5HY64 1035 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 PCNX4Q63HM2 1172 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 APOBEC3HQ6NTF7 200 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 MMS22LQ6ZRQ5 1243 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 ZNF662Q6ZS27 426 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 RAB3IL1Q8TBN0 382 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 TAAR1Q96RJ0 339 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 SH2D3AQ9BRG2 576 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 VCX3BQ9H321 246 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 PRKCBP05771 671 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 SLC12A3P55017 1021 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 CDO1Q16878 200 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 LMBRD2Q68DH5 695 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 ZNF571Q7Z3V5 609 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 SRRM1Q8IYB3 904 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 PACSIN1Q9BY11 444 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 THAP2Q9H0W7 228 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 LRRC4Q9HBW1 653 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 F8VZ95 297 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 ARP10275 920 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 BRAFP15056 766 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 RPS6P62753 249 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 PPP2R5CQ13362 524 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 SIX6OS1Q8N1H7 587 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 ZNF473Q8WTR7 871 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 CPA5Q8WXQ8 436 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 CAVIN3Q969G5 261 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 CNOT7Q9UIV1 285 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 DBR1Q9UK59 544 aaKnown RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 KRT37O76014 449 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 ATG16L1Q676U5 607 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 HIBCHQ6NVY1 386 aaPredicted RBP11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 CCNYQ8ND76 341 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 SMC1BQ8NDV3 1235 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 DEPDC1BQ8WUY9 529 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 TMEM143Q96AN5 459 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 GTF3C4Q9UKN8 822 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 SIK3Q9Y2K2 1263 aa11.44□□□□□ -0.58
LIMCH1-205ENST00000503057 ATP5HO75947 161 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 CNGA1P29973 690 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 ACOT2P49753 483 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 OR6B3Q8NGW1 331 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 MKL1Q969V6 931 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 NUDT12Q9BQG2 462 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 TOPORSQ9NS56 1045 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 ARHGAP42A6NI28 874 aa11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 VIL1P09327 827 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-205ENST00000503057 PSMC6P62333 389 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms