RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 SMPD1P17405 629 aa9.02□□□□□ -0.97
USP54-215ENST00000497106 CAPSQ13938 189 aa9.02□□□□□ -0.97
USP54-215ENST00000497106 STILQ15468 1287 aa9.02□□□□□ -0.97
USP54-215ENST00000497106 KIFC3Q9BVG8 833 aa9.02□□□□□ -0.97
USP54-215ENST00000497106 KCNF1Q9H3M0 494 aa9.02□□□□□ -0.97
USP54-215ENST00000497106 ASB7Q9H672 318 aa9.02□□□□□ -0.97
USP54-215ENST00000497106 INTUQ9ULD6 942 aa9.02□□□□□ -0.97
USP54-215ENST00000497106 IGF2BP3O00425 579 aaKnown RBP eCLIP9.01□□□□□ -0.97
USP54-215ENST00000497106 PMM2O15305 246 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 SEPT4O43236 478 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 TCP1P17987 556 aaKnown RBP9.01□□□□□ -0.97
USP54-215ENST00000497106 PON1P27169 355 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 NSFP46459 744 aaKnown RBP9.01□□□□□ -0.97
USP54-215ENST00000497106 FXR1P51114 621 aaKnown RBP eCLIP9.01□□□□□ -0.97
USP54-215ENST00000497106 RBP5P82980 135 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 MAPK7Q13164 816 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 TRIM50Q86XT4 487 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 PDCL2Q8N4E4 241 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 HMX1Q9NP08 348 aaPredicted RBP9.01□□□□□ -0.97
USP54-215ENST00000497106 CTTNBP2NLQ9P2B4 639 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 SMIM10L2AP0DMW4 78 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 SMIM10L2BP0DMW5 78 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 ATICP31939 592 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 FLT3LGP49771 235 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 RAB27AP51159 221 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 MAIP1Q8WWC4 291 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 GOLGA1Q92805 767 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 DESI2Q9BSY9 194 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 WRAP73Q9P2S5 460 aaPredicted RBP9.01□□□□□ -0.97
USP54-215ENST00000497106 RNF14Q9UBS8 474 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 ANO9A1A5B4 782 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 CD19P15391 556 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 PNPLA4P41247 253 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 PTPN11Q06124 597 aaPredicted RBP9.01□□□□□ -0.97
USP54-215ENST00000497106 TMEM132DQ14C87 1099 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 MIIPQ5JXC2 388 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 TWF2Q6IBS0 349 aaKnown RBP9.01□□□□□ -0.97
USP54-215ENST00000497106 TRIM65Q6PJ69 517 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 KSR1Q8IVT5 923 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 HYOU1Q9Y4L1 999 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 DYNC1I1O14576 645 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 RPS6KA5O75582 802 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 CASP4P49662 377 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 MAPK8IP2Q13387 824 aaPredicted RBP9.01□□□□□ -0.97
USP54-215ENST00000497106 PPP2R5EQ16537 467 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 DMAC2Q9NW81 257 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 HESX1Q9UBX0 185 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 SIK3Q9Y2K2 1263 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 TRPV2Q9Y5S1 764 aa9.01□□□□□ -0.97
USP54-215ENST00000497106 TRPA1O75762 1119 aa9□□□□□ -0.97
USP54-215ENST00000497106 PPP1R37O75864 691 aa9□□□□□ -0.97
USP54-215ENST00000497106 PAX3P23760 479 aa9□□□□□ -0.97
USP54-215ENST00000497106 SP2Q02086 613 aa9□□□□□ -0.97
USP54-215ENST00000497106 TAPT1Q6NXT6 567 aa9□□□□□ -0.97
USP54-215ENST00000497106 ALKBH5Q6P6C2 394 aaKnown RBP9□□□□□ -0.97
USP54-215ENST00000497106 CBWD2Q8IUF1 395 aa9□□□□□ -0.97
USP54-215ENST00000497106 MFSD14AQ96MC6 490 aa9□□□□□ -0.97
USP54-215ENST00000497106 FAM124BQ9H5Z6 455 aaPredicted RBP9□□□□□ -0.97
USP54-215ENST00000497106 XPNPEP1Q9NQW7 623 aa9□□□□□ -0.97
USP54-215ENST00000497106 PIN4Q9Y237 131 aaKnown RBP9□□□□□ -0.97
USP54-215ENST00000497106 ATP8B3O60423 1300 aa9□□□□□ -0.97
USP54-215ENST00000497106 ZNF646O15015 1829 aaPredicted RBP9□□□□□ -0.97
USP54-215ENST00000497106 TMEM150BA6NC51 233 aa9□□□□□ -0.97
USP54-215ENST00000497106 SNAI1O95863 264 aaPredicted RBP9□□□□□ -0.97
USP54-215ENST00000497106 HLA-DRAP01903 254 aa9□□□□□ -0.97
USP54-215ENST00000497106 SSR1P43307 286 aaKnown RBP9□□□□□ -0.97
USP54-215ENST00000497106 GOLGA8FQ08AF8 430 aa9□□□□□ -0.97
USP54-215ENST00000497106 GOLGA8DPQ0D2H9 430 aa9□□□□□ -0.97
USP54-215ENST00000497106 NCOA4Q13772 614 aa9□□□□□ -0.97
USP54-215ENST00000497106 ARID5BQ14865 1188 aa9□□□□□ -0.97
USP54-215ENST00000497106 SLC18A3Q16572 532 aa9□□□□□ -0.97
USP54-215ENST00000497106 SEL1L2Q5TEA6 688 aa9□□□□□ -0.97
USP54-215ENST00000497106 METTL23Q86XA0 190 aa9□□□□□ -0.97
USP54-215ENST00000497106 IRF2BP1Q8IU81 584 aa9□□□□□ -0.97
USP54-215ENST00000497106 NPLOC4Q8TAT6 608 aa9□□□□□ -0.97
USP54-215ENST00000497106 MRPL47Q9HD33 250 aaKnown RBP9□□□□□ -0.97
USP54-215ENST00000497106 SETD4Q9NVD3 440 aa9□□□□□ -0.97
USP54-215ENST00000497106 AMFRQ9UKV5 643 aa9□□□□□ -0.97
USP54-215ENST00000497106 SCINQ9Y6U3 715 aa9□□□□□ -0.97
USP54-215ENST00000497106 A0A087WZ62 844 aa9□□□□□ -0.97
USP54-215ENST00000497106 ACOT2P49753 483 aa9□□□□□ -0.97
USP54-215ENST00000497106 BFSP2Q13515 415 aa9□□□□□ -0.97
USP54-215ENST00000497106 RPS6KA1Q15418 735 aa9□□□□□ -0.97
USP54-215ENST00000497106 TARBP2Q15633 366 aaKnown RBP9□□□□□ -0.97
USP54-215ENST00000497106 MEA1Q16626 185 aa9□□□□□ -0.97
USP54-215ENST00000497106 SLC27A1Q6PCB7 646 aa9□□□□□ -0.97
USP54-215ENST00000497106 PARD3BQ8TEW8 1205 aa9□□□□□ -0.97
USP54-215ENST00000497106 FAM193BQ96PV7 902 aaPredicted RBP9□□□□□ -0.97
USP54-215ENST00000497106 NCAPGQ9BPX3 1015 aa9□□□□□ -0.97
USP54-215ENST00000497106 FDXACB1Q9BRP7 624 aaPredicted RBP9□□□□□ -0.97
USP54-215ENST00000497106 UBN1Q9NPG3 1134 aa9□□□□□ -0.97
USP54-215ENST00000497106 AIPL1Q9NZN9 384 aa9□□□□□ -0.97
USP54-215ENST00000497106 UBQLN1Q9UMX0 589 aaKnown RBP9□□□□□ -0.97
USP54-215ENST00000497106 SBF1O95248 1867 aa9□□□□□ -0.97
USP54-215ENST00000497106 A6NJR5 290 aa9□□□□□ -0.97
USP54-215ENST00000497106 PEX10O60683 326 aa9□□□□□ -0.97
USP54-215ENST00000497106 ARIH2O95376 493 aa9□□□□□ -0.97
USP54-215ENST00000497106 GCNT1Q02742 428 aa9□□□□□ -0.97
USP54-215ENST00000497106 TAF3Q5VWG9 929 aa9□□□□□ -0.97
USP54-215ENST00000497106 DAW1Q8N136 415 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms