RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 TAP1Q03518 808 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 CRLF3Q8IUI8 442 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 RHOT1Q8IXI2 618 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 TUBB6Q9BUF5 446 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 TRPV6Q9H1D0 765 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 PLEKHA5Q9HAU0 1116 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 KLC4Q9NSK0 619 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 HSPBP1Q9NZL4 362 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 QRICH2Q9H0J4 1663 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 ZC3H4Q9UPT8 1303 aaKnown RBP13.92□□□□□ -0.18
PTPRF-215ENST00000496447 INPP1P49441 399 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 EMC2Q15006 297 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 DDX53Q86TM3 631 aaKnown RBP13.92□□□□□ -0.18
PTPRF-215ENST00000496447 CHST13Q8NET6 341 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 GIPC2Q8TF65 315 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 RMDN1Q96DB5 314 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 SPATA17Q96L03 361 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 ZFXP17010 805 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-215ENST00000496447 TMPRSS15P98073 1019 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 IMPG1Q17R60 797 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 AGBL3Q8NEM8 1001 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 CCDC124Q96CT7 223 aaKnown RBP13.92□□□□□ -0.18
PTPRF-215ENST00000496447 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.92□□□□□ -0.18
PTPRF-215ENST00000496447 TRIM66O15016 1216 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 HADHAP40939 763 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 CDH6P55285 790 aa13.92□□□□□ -0.18
PTPRF-215ENST00000496447 ZNF211Q13398 564 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-215ENST00000496447 ALDH8A1Q9H2A2 487 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-215ENST00000496447 CD163L1Q9NR16 1453 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 KPNA7A9QM74 516 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 POLRMTO00411 1230 aaKnown RBP13.91□□□□□ -0.18
PTPRF-215ENST00000496447 TMCC1O94876 653 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 ITGA4P13612 1032 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 MX2P20592 715 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 IFNA8P32881 189 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 CAV1Q03135 178 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 FOXD4Q12950 439 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-215ENST00000496447 SEMA3FQ13275 785 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 EGFL8Q99944 293 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 RFC5P40937 340 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 ACOT2P49753 483 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 SULT1E1P49888 294 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 HSD17B4P51659 736 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 MRPS25P82663 173 aaKnown RBP13.91□□□□□ -0.18
PTPRF-215ENST00000496447 KLHL38Q2WGJ6 581 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 FAM133BQ5BKY9 247 aaKnown RBP13.91□□□□□ -0.18
PTPRF-215ENST00000496447 MORC4Q8TE76 937 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 PBXIP1Q96AQ6 731 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 EPAS1Q99814 870 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 BPIFA3Q9BQP9 254 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 BFARQ9NZS9 450 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 ANGPTL2Q9UKU9 493 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 CTIFO43310 598 aaKnown RBP13.91□□□□□ -0.18
PTPRF-215ENST00000496447 FCGRTP55899 365 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 KRT82Q9NSB4 513 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 NDFIP2Q9NV92 336 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 GTSE1Q9NYZ3 720 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 USP42Q9H9J4 1324 aaKnown RBP13.91□□□□□ -0.18
PTPRF-215ENST00000496447 RASSF10A6NK89 507 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 SPECC1L-ADORA2AF8WAN1 911 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 GLE1Q53GS7 698 aaKnown RBP13.91□□□□□ -0.18
PTPRF-215ENST00000496447 STOX1Q6ZVD7 989 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 RASSF3Q86WH2 238 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 OR6P1Q8NGX9 317 aa13.91□□□□□ -0.18
PTPRF-215ENST00000496447 ZNF512BQ96KM6 892 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-215ENST00000496447 UBA6A0AVT1 1052 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-215ENST00000496447 PRRG1O14668 218 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 TBX3O15119 743 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 CYP2C9P11712 490 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 COPS2P61201 443 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 NOP14P78316 857 aaKnown RBP13.9□□□□□ -0.18
PTPRF-215ENST00000496447 PRKCEQ02156 737 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 POU5F1BQ06416 359 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 DGKDQ16760 1214 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 GLYCTKQ8IVS8 523 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 SCFD2Q8WU76 684 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 SERPINI1Q99574 410 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 AFF4Q9UHB7 1163 aaKnown RBP13.9□□□□□ -0.18
PTPRF-215ENST00000496447 RASA1P20936 1047 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 ST8SIA6P61647 398 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 GNASQ5JWF2 1037 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 GLB1LQ6UWU2 654 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 ZNF212Q9UDV6 495 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 MED14O60244 1454 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 IQSEC2Q5JU85 1478 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 APOL1O14791 398 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 PPP1R12AO14974 1030 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-215ENST00000496447 SLC16A3O15427 465 aaKnown RBP13.9□□□□□ -0.18
PTPRF-215ENST00000496447 ASAP2O43150 1006 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 CYP26A1O43174 497 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 CPT1AP50416 773 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 TPI1P60174 286 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 FBXO33Q7Z6M2 555 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 RMDN2Q96LZ7 410 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 WNT8AQ9H1J5 351 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 PIK3R2O00459 728 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 DNAJC6O75061 913 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 PDHBP11177 359 aa13.9□□□□□ -0.18
PTPRF-215ENST00000496447 ACTN3Q08043 901 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-215ENST00000496447 SHC4Q6S5L8 630 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms