RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 CNOT10Q9H9A5 744 aaKnown RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 ZBTB12Q9Y330 459 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 SAMD9Q5K651 1589 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 KCNQ2O43526 872 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 GPS1Q13098 491 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 SPARCL1Q14515 664 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 PCSK7Q16549 785 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 PFKFB3Q16875 520 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 KLHL38Q2WGJ6 581 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 DCP1BQ8IZD4 617 aaKnown RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 NDUFA10O95299 355 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 MRPS25P82663 173 aaKnown RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 NNTQ13423 1086 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 TMEM132DQ14C87 1099 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 GPRC5AQ8NFJ5 357 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 GLT1D1Q96MS3 346 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 FAM129AQ9BZQ8 928 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 PKP3Q9Y446 797 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 RPAP1Q9BWH6 1393 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 TTLL13PA6NNM8 815 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 RASA4BC9J798 803 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 CTIFO43310 598 aaKnown RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 RASA4O43374 803 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 ADCY2Q08462 1091 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 WDR72Q3MJ13 1102 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 PPP1R36Q96LQ0 422 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 DDX56Q9NY93 547 aaKnown RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 IGSF1Q8N6C5 1336 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 PER1O15534 1290 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 ASAP2O43150 1006 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 ATN1P54259 1190 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 GABPB1Q06547 395 aaPredicted RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 KNOP1Q1ED39 458 aaKnown RBP13.88□□□□□ -0.19
COL6A3-212ENST00000491769 RNF14Q9UBS8 474 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 SYNGAP1Q96PV0 1343 aa13.88□□□□□ -0.19
COL6A3-212ENST00000491769 CPDO75976 1380 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 MAFGO15525 162 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 PFDN1O60925 122 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 LIFRP42702 1097 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 CPT1AP50416 773 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 HIF1AQ16665 826 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 ETFBP38117 255 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 HARS2P49590 506 aaKnown RBP13.87□□□□□ -0.19
COL6A3-212ENST00000491769 NR1H3Q13133 447 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 PKP1Q13835 747 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 SYCP2LQ5T4T6 812 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 NFKBIL1Q9UBC1 381 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-212ENST00000491769 NRBP1Q9UHY1 535 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 DCDC2CA8MYV0 355 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 PODXLO00592 558 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 BAATQ14032 418 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-212ENST00000491769 NFIXQ14938 502 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 OVOS2A0A0G2JMS6 1433 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 OVOS2A0A0J9YW53 1432 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 OVOS2Q6IE36 1432 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 TRIM49BA6NDI0 452 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 SPAG7O75391 227 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 SUPT3HO75486 399 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 NDUFS3O75489 264 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 APOA4P06727 396 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 AP3M2P53677 418 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 KCNH2Q12809 1159 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 KCNB1Q14721 858 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 TMEM132BQ14DG7 1078 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 NUGGCQ68CJ6 796 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 SMIM5Q71RC9 77 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 ABTB1Q969K4 478 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-212ENST00000491769 CEP72Q9P209 647 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 DIS3Q9Y2L1 958 aaKnown RBP13.87□□□□□ -0.19
COL6A3-212ENST00000491769 ARHGEF12Q9NZN5 1544 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 KDM1AO60341 852 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 KRT31Q15323 416 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 CHAMP1Q96JM3 812 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 YME1L1Q96TA2 773 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 BCL2L12Q9HB09 334 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 EML4Q9HC35 981 aaKnown RBP13.87□□□□□ -0.19
COL6A3-212ENST00000491769 GIMAP4Q9NUV9 329 aa13.87□□□□□ -0.19
COL6A3-212ENST00000491769 PRG3Q9Y2Y8 225 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-212ENST00000491769 ZNF211Q13398 564 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-212ENST00000491769 E2F5Q15329 346 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 C10orf120Q5SQS8 335 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 MARCH10Q8NA82 808 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-212ENST00000491769 ATP11CQ8NB49 1132 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 ATP11BQ9Y2G3 1177 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 PTCH1Q13635 1447 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 RNF103-CHMP3A0A140T963 221 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 CYP2C9P11712 490 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 RBP5P82980 135 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 SCFD1Q8WVM8 642 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 PITPNM3Q9BZ71 974 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 SOAT1P35610 550 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 MAP2K2P36507 400 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 THPOP40225 353 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 ATXN3P54252 364 aaPredicted RBP13.86□□□□□ -0.19
COL6A3-212ENST00000491769 HPCAP84074 193 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 PDIA2Q13087 525 aaKnown RBP13.86□□□□□ -0.19
COL6A3-212ENST00000491769 TDRD7Q8NHU6 1098 aaKnown RBP13.86□□□□□ -0.19
COL6A3-212ENST00000491769 TEX13BQ9BXU2 312 aa13.86□□□□□ -0.19
COL6A3-212ENST00000491769 DCP1AQ9NPI6 582 aaPredicted RBP13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms