RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 KCNC3Q14003 757 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 DCAF4L1Q3SXM0 396 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 ZNF568Q3ZCX4 644 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 GLRA4Q5JXX5 417 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 AXDND1Q5T1B0 1012 aaPredicted RBP15.27■□□□□ 0.04
SYNE1-226ENST00000488376 RRAGBQ5VZM2 374 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 SHC4Q6S5L8 630 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 HAUS6Q7Z4H7 955 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 HACE1Q8IYU2 909 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 TMEM130Q8N3G9 435 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 MYCT1Q8N699 235 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 PDILTQ8N807 584 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 MRPL43Q8N983 215 aaKnown RBP15.27■□□□□ 0.04
SYNE1-226ENST00000488376 FEZF2Q8TBJ5 459 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 ZNF396Q96N95 335 aaPredicted RBP15.27■□□□□ 0.04
SYNE1-226ENST00000488376 ADPGKQ9BRR6 497 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 ZHX3Q9H4I2 956 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 CD320Q9NPF0 282 aa15.27■□□□□ 0.04
SYNE1-226ENST00000488376 BRWD1Q9NSI6 2320 aa15.27■□□□□ 0.03
SYNE1-226ENST00000488376 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.26■□□□□ 0.03
SYNE1-226ENST00000488376 CASTOR2A6NHX0 329 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 K7ENM7 598 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 FAM13AO94988 1023 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 YEATS4O95619 227 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 KRT18P05783 430 aaKnown RBP15.26■□□□□ 0.03
SYNE1-226ENST00000488376 SMC1AQ14683 1233 aaKnown RBP15.26■□□□□ 0.03
SYNE1-226ENST00000488376 PTPN14Q15678 1187 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 ZC2HC1CQ53FD0 456 aaPredicted RBP15.26■□□□□ 0.03
SYNE1-226ENST00000488376 PDE12Q6L8Q7 609 aaKnown RBP15.26■□□□□ 0.03
SYNE1-226ENST00000488376 SFR1Q86XK3 245 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 HASPINQ8TF76 798 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 DDX12PQ92771 950 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 STAMQ92783 540 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 RPS6KC1Q96S38 1066 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 PARVGQ9HBI0 331 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 NGRNQ9NPE2 291 aaKnown RBP15.26■□□□□ 0.03
SYNE1-226ENST00000488376 LARSQ9P2J5 1176 aaKnown RBP15.26■□□□□ 0.03
SYNE1-226ENST00000488376 ANKFY1Q9P2R3 1169 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 STK17AQ9UEE5 414 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 CCDC39Q9UFE4 941 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 CDH22Q9UJ99 828 aa15.26■□□□□ 0.03
SYNE1-226ENST00000488376 TCF20Q9UGU0 1960 aaKnown RBP15.25■□□□□ 0.03
SYNE1-226ENST00000488376 TISP43B9A030 160 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 NCK2O43639 380 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 CLASP2O75122 1294 aaKnown RBP15.25■□□□□ 0.03
SYNE1-226ENST00000488376 PPP6R2O75170 966 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 BRD1O95696 1058 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 CTSAP10619 480 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 GRM5P41594 1212 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 STAT6P42226 847 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 SMTNP53814 917 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 STRN3Q13033 797 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 ZBTB41Q5SVQ8 909 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 SLC39A4Q6P5W5 647 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 MPZL3Q6UWV2 235 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 RNF168Q8IYW5 571 aaPredicted RBP15.25■□□□□ 0.03
SYNE1-226ENST00000488376 PPP2R3CQ969Q6 453 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 DNAJC19Q96DA6 116 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 APOL5Q9BWW9 433 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 FGFBP2Q9BYJ0 223 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 GPR62Q9BZJ7 368 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 GOLGA2P5Q9HBQ8 144 aa15.25■□□□□ 0.03
SYNE1-226ENST00000488376 ZMYM2Q9UBW7 1377 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 C2CD2LO14523 706 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 MBTPS2O43462 519 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 TRAK2O60296 914 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 LILRB3O75022 631 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 TBCAO75347 108 aaKnown RBP15.24■□□□□ 0.03
SYNE1-226ENST00000488376 KIF4AO95239 1232 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 MCF2P10911 925 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 TXLNAP40222 546 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 SOX4Q06945 474 aaPredicted RBP15.24■□□□□ 0.03
SYNE1-226ENST00000488376 TUSC3Q13454 348 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 E2F4Q16254 413 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 KANK3Q6NY19 840 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 KHSRPQ92945 711 aaKnown RBP eCLIP15.24■□□□□ 0.03
SYNE1-226ENST00000488376 ZMAT2Q96NC0 199 aaKnown RBP15.24■□□□□ 0.03
SYNE1-226ENST00000488376 PPP1R10Q96QC0 940 aaKnown RBP15.24■□□□□ 0.03
SYNE1-226ENST00000488376 TCHPQ9BT92 498 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 TBC1D7Q9P0N9 293 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 CD207Q9UJ71 328 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 TBX20Q9UMR3 447 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 PCDHA7Q9UN72 937 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 MUC3AQ02505 3323 aa15.24■□□□□ 0.03
SYNE1-226ENST00000488376 SMIM28A0A1B0GU29 152 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 CUTAO60888 179 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 TOM1L1O75674 476 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 THP07101 528 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 EPCAMP16422 314 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 TNFSF9P41273 254 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 CASP5P51878 434 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 MCL1Q07820 350 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 HSP90AA2PQ14568 343 aaPredicted RBP15.23■□□□□ 0.03
SYNE1-226ENST00000488376 NOLC1Q14978 699 aaKnown RBP eCLIP15.23■□□□□ 0.03
SYNE1-226ENST00000488376 SYCE2Q6PIF2 218 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 ALKAL1Q6UXT8 129 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 CCDC73Q6ZRK6 1079 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 SV2BQ7L1I2 683 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 FAM178BQ8IXR5 827 aa15.23■□□□□ 0.03
SYNE1-226ENST00000488376 SMRP1Q8NCR6 262 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms