RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 PPP4R3AQ6IN85 833 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 POTEHQ6S545 545 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 KRT25Q7Z3Z0 450 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 EXOC8Q8IYI6 725 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 ITFG1Q8TB96 612 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 NELL1Q92832 810 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 FGF13Q92913 245 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 DYDC2Q96IM9 177 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 CNTNAP3BQ96NU0 1288 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 CNTNAP3Q9BZ76 1288 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 CXCL16Q9H2A7 254 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 KCNJ14Q9UNX9 436 aa17.09■□□□□ 0.33
MCF2L-228ENST00000487354 ZFP37Q9Y6Q3 630 aaPredicted RBP17.09■□□□□ 0.33
MCF2L-228ENST00000487354 MAP1BP46821 2468 aaKnown RBP17.08■□□□□ 0.33
MCF2L-228ENST00000487354 INO80B-WBP1J3KQ70 363 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 DKC1O60832 514 aaKnown RBP eCLIP17.08■□□□□ 0.32
MCF2L-228ENST00000487354 KINO60870 393 aaKnown RBP17.08■□□□□ 0.32
MCF2L-228ENST00000487354 KRT37O76014 449 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 KIF4AO95239 1232 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 CYP4A11Q02928 519 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 POU5F1BQ06416 359 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 SSRP1Q08945 709 aaKnown RBP17.08■□□□□ 0.32
MCF2L-228ENST00000487354 NAB2Q15742 525 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 XKR9Q5GH70 373 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 EARS2Q5JPH6 523 aaKnown RBP17.08■□□□□ 0.32
MCF2L-228ENST00000487354 POTEDQ86YR6 584 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 LNX1Q8TBB1 728 aaPredicted RBP17.08■□□□□ 0.32
MCF2L-228ENST00000487354 PHF20Q9BVI0 1012 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 KLK14Q9P0G3 267 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 FBXO4Q9UKT5 387 aa17.08■□□□□ 0.32
MCF2L-228ENST00000487354 PTGESO14684 152 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 SPTLC1O15269 473 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 LILRB5O75023 590 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 NPTXRO95502 500 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 TGM1P22735 817 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 GLRA2P23416 452 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 ARL2P36404 184 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 CREMQ03060 361 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 HSP90AA2PQ14568 343 aaPredicted RBP17.07■□□□□ 0.32
MCF2L-228ENST00000487354 GALNT17Q6IS24 598 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 TRIM22Q8IYM9 498 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 FAM177A1Q8N128 213 aaPredicted RBP17.07■□□□□ 0.32
MCF2L-228ENST00000487354 ZBTB44Q8NCP5 570 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 OXER1Q8TDS5 423 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 HASPINQ8TF76 798 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 PIK3R5Q8WYR1 880 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 NFKBIZQ9BYH8 718 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 LTB4R2Q9NPC1 389 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 HCFC1R1Q9NWW0 138 aa17.07■□□□□ 0.32
MCF2L-228ENST00000487354 TICRRQ7Z2Z1 1910 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 SF3B1O75533 1304 aaKnown RBP eCLIP17.06■□□□□ 0.32
MCF2L-228ENST00000487354 A0A1B0GUA9 196 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 FAM205CA6NFA0 338 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 TTLL13PA6NNM8 815 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 TBX3O15119 743 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 CCL16O15467 120 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 NR1I2O75469 434 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 SLITRK3O94933 977 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 C8AP07357 584 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 POU2F2P09086 479 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 HNRNPA1P09651 372 aaKnown RBP eCLIP17.06■□□□□ 0.32
MCF2L-228ENST00000487354 CD72P21854 359 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 IGFBP6P24592 240 aaPredicted RBP17.06■□□□□ 0.32
MCF2L-228ENST00000487354 HOXA9P31269 272 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 PRKCQQ04759 706 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 FZD5Q13467 585 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 MXD4Q14582 209 aaPredicted RBP17.06■□□□□ 0.32
MCF2L-228ENST00000487354 SLC44A4Q53GD3 710 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 VARS2Q5ST30 1063 aaKnown RBP17.06■□□□□ 0.32
MCF2L-228ENST00000487354 NCAPH2Q6IBW4 605 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 SLC27A1Q6PCB7 646 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 NEK8Q86SG6 692 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 NPAS3Q8IXF0 933 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 SHDQ96IW2 340 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 KXD1Q9BQD3 176 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 LARP6Q9BRS8 491 aaKnown RBP17.06■□□□□ 0.32
MCF2L-228ENST00000487354 OSBPL6Q9BZF3 934 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 SLKQ9H2G2 1235 aaPredicted RBP17.06■□□□□ 0.32
MCF2L-228ENST00000487354 ZSWIM4Q9H7M6 989 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 GJB4Q9NTQ9 266 aa17.06■□□□□ 0.32
MCF2L-228ENST00000487354 SPATA6Q9NWH7 488 aaPredicted RBP17.06■□□□□ 0.32
MCF2L-228ENST00000487354 LYPLA2O95372 231 aa17.05■□□□□ 0.32
MCF2L-228ENST00000487354 GCFC2P16383 781 aaKnown RBP17.05■□□□□ 0.32
MCF2L-228ENST00000487354 TARSP26639 723 aaKnown RBP17.05■□□□□ 0.32
MCF2L-228ENST00000487354 TUSC3Q13454 348 aa17.05■□□□□ 0.32
MCF2L-228ENST00000487354 PSMD5Q16401 504 aa17.05■□□□□ 0.32
MCF2L-228ENST00000487354 OTUD6AQ7L8S5 288 aa17.05■□□□□ 0.32
MCF2L-228ENST00000487354 ZNF687Q8N1G0 1237 aa17.05■□□□□ 0.32
MCF2L-228ENST00000487354 CLDN23Q96B33 292 aa17.05■□□□□ 0.32
MCF2L-228ENST00000487354 TTPALQ9BTX7 342 aa17.05■□□□□ 0.32
MCF2L-228ENST00000487354 BCO2Q9BYV7 579 aa17.05■□□□□ 0.32
MCF2L-228ENST00000487354 EPC1Q9H2F5 836 aa17.05■□□□□ 0.32
MCF2L-228ENST00000487354 PRMT8Q9NR22 394 aaPredicted RBP17.05■□□□□ 0.32
MCF2L-228ENST00000487354 PCDHGA2Q9Y5H1 932 aa17.05■□□□□ 0.32
MCF2L-228ENST00000487354 USP24Q9UPU5 2620 aa17.04■□□□□ 0.32
MCF2L-228ENST00000487354 CHD8Q9HCK8 2581 aa17.04■□□□□ 0.32
MCF2L-228ENST00000487354 F5P12259 2224 aa17.04■□□□□ 0.32
MCF2L-228ENST00000487354 PDCD11Q14690 1871 aaKnown RBP17.04■□□□□ 0.32
MCF2L-228ENST00000487354 CASTOR2A6NHX0 329 aa17.04■□□□□ 0.32
MCF2L-228ENST00000487354 FAM170BA6NMN3 283 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms