RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 TSHRP16473 764 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 IL6STP40189 918 aaPredicted RBP6.31□□□□□ -1.4
UPF3B-203ENST00000478840 POU5F1BQ06416 359 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 KCNMB1Q16558 191 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 PRR31Q5SQ13 230 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 GPR155Q7Z3F1 870 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 PQLC1Q8N2U9 271 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 MSL3Q8N5Y2 521 aaKnown RBP6.31□□□□□ -1.4
UPF3B-203ENST00000478840 LILRA3Q8N6C8 439 aaPredicted RBP6.31□□□□□ -1.4
UPF3B-203ENST00000478840 CASKIN2Q8WXE0 1202 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 SUCLG2Q96I99 432 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 MRGPRX1Q96LB2 322 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 ZSWIM3Q96MP5 696 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 PDCD2LQ9BRP1 358 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 CRB3Q9BUF7 120 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 C14orf93Q9H972 538 aaKnown RBP6.31□□□□□ -1.4
UPF3B-203ENST00000478840 SIRT5Q9NXA8 310 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 GPRC5BQ9NZH0 403 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 LRCH1Q9Y2L9 728 aa6.31□□□□□ -1.4
UPF3B-203ENST00000478840 USP19O94966 1318 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 MYBBP1AQ9BQG0 1328 aaKnown RBP6.3□□□□□ -1.4
UPF3B-203ENST00000478840 MYOCOSA0A1B0GUC4 107 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 KPNA5O15131 536 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 MTSS1O43312 755 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 SH3BP5O60239 455 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 FGF18O76093 207 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 KLHL18O94889 574 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 NPR1P16066 1061 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 SYN1P17600 705 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 EN2P19622 333 aaPredicted RBP6.3□□□□□ -1.4
UPF3B-203ENST00000478840 PPM1AP35813 382 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 FOXO4P98177 505 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 FMO1Q01740 532 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 TNFAIP2Q03169 654 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 MTM1Q13496 603 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 RALBP1Q15311 655 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 CNGA2Q16280 664 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 ZNF827Q17R98 1081 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 PRR16Q569H4 304 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 FAM209BQ5JX69 171 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 TMED8Q6PL24 325 aaPredicted RBP6.3□□□□□ -1.4
UPF3B-203ENST00000478840 ZNF605Q86T29 641 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 RSPH3Q86UC2 560 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 IGDCC3Q8IVU1 814 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 SMAP1Q8IYB5 467 aaPredicted RBP6.3□□□□□ -1.4
UPF3B-203ENST00000478840 ZGPATQ8N5A5 531 aaKnown RBP6.3□□□□□ -1.4
UPF3B-203ENST00000478840 RNF152Q8N8N0 203 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 MZB1Q8WU39 189 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 UIMC1Q96RL1 719 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 VRK1Q99986 396 aaPredicted RBP6.3□□□□□ -1.4
UPF3B-203ENST00000478840 PRDM16Q9HAZ2 1276 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 ZNF287Q9HBT7 754 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 CASS4Q9NQ75 786 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 LANCL2Q9NS86 450 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 STAP2Q9UGK3 403 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 FEZ2Q9UHY8 353 aaPredicted RBP6.3□□□□□ -1.4
UPF3B-203ENST00000478840 CROTQ9UKG9 612 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 CORO2BQ9UQ03 480 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 SNX13Q9Y5W8 968 aa6.3□□□□□ -1.4
UPF3B-203ENST00000478840 MORC2Q9Y6X9 1032 aaPredicted RBP6.3□□□□□ -1.4
UPF3B-203ENST00000478840 TEX51A0A1B0GUA7 166 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 BIN1O00499 593 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 IL18RAPO95256 599 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 DDCP20711 480 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 STT3AP46977 705 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 STAT5BP51692 787 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 ARFIP2P53365 341 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 MLLT6P55198 1093 aaPredicted RBP6.29□□□□□ -1.4
UPF3B-203ENST00000478840 GP2P55259 537 aaKnown RBP6.29□□□□□ -1.4
UPF3B-203ENST00000478840 PER3P56645 1201 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 CTXN1P60606 82 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 SMAD4Q13485 552 aaKnown RBP6.29□□□□□ -1.4
UPF3B-203ENST00000478840 DAG1Q14118 895 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 TUBB8Q3ZCM7 444 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 DACT2Q5SW24 774 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 EMC10Q5UCC4 262 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 GADL1Q6ZQY3 521 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 SYDE1Q6ZW31 735 aaPredicted RBP6.29□□□□□ -1.4
UPF3B-203ENST00000478840 STK32CQ86UX6 486 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 FAM90A1Q86YD7 464 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 CPXCR1Q8N123 301 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 OR10H5Q8NGA6 315 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 ZSCAN18Q8TBC5 510 aaPredicted RBP6.29□□□□□ -1.4
UPF3B-203ENST00000478840 ZCCHC14Q8WYQ9 949 aaKnown RBP6.29□□□□□ -1.4
UPF3B-203ENST00000478840 LPPQ93052 612 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 RAB24Q969Q5 203 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 KIAA1191Q96A73 305 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 TMX3Q96JJ7 454 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 NOX5Q96PH1 765 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 KATNBL1Q9H079 304 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 VPS11Q9H270 941 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 CERS4Q9HA82 394 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 PNPLA8Q9NP80 782 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 PIH1D1Q9NWS0 290 aaKnown RBP6.29□□□□□ -1.4
UPF3B-203ENST00000478840 GPRC5DQ9NZD1 345 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 CDC42EP3Q9UKI2 254 aa6.29□□□□□ -1.4
UPF3B-203ENST00000478840 ADCY6O43306 1168 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 NCK2O43639 380 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 ALDH1A2O94788 518 aa6.28□□□□□ -1.4
UPF3B-203ENST00000478840 HMGCRP04035 888 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms