RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 SPDYE3A6NKU9 549 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 ZBTB42B2RXF5 422 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 DDHD2O94830 711 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 FCARP24071 287 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 GBP1P32455 592 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 HOXD12P35452 270 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 CCINQ13939 588 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 IFIT1BQ5T764 474 aaKnown RBP9.08□□□□□ -0.96
USP54-211ENST00000474929 PMS2CLQ68D20 193 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 EFCAB12Q6NXP0 572 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 FUT10Q6P4F1 479 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 HAUS6Q7Z4H7 955 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 RABEPKQ7Z6M1 372 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 GLYCTKQ8IVS8 523 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 TEX2Q8IWB9 1127 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 ENAHQ8N8S7 591 aaPredicted RBP9.08□□□□□ -0.96
USP54-211ENST00000474929 MDM1Q8TC05 714 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 EXOC4Q96A65 974 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 ASB16Q96NS5 453 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 PIGSQ96S52 555 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 ZKSCAN3Q9BRR0 538 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 RIOX1Q9H6W3 641 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 LY9Q9HBG7 655 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 KCNH7Q9NS40 1196 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 RBM12Q9NTZ6 932 aaKnown RBP9.08□□□□□ -0.96
USP54-211ENST00000474929 SEPT9Q9UHD8 586 aaPredicted RBP9.08□□□□□ -0.96
USP54-211ENST00000474929 CELSR3Q9NYQ7 3312 aa9.08□□□□□ -0.96
USP54-211ENST00000474929 TEP1Q99973 2627 aaKnown RBP9.07□□□□□ -0.96
USP54-211ENST00000474929 MYBPHLA2RUH7 354 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 ENO4A6NNW6 628 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 E9PAM4 449 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 SPECC1L-ADORA2AF8WAN1 911 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 CHADO15335 359 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 B4GALT3O60512 393 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 WISP1O95388 367 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 FGAP02671 866 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 RHOP08100 348 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 RPL17P18621 184 aaKnown RBP9.07□□□□□ -0.96
USP54-211ENST00000474929 CTHP32929 405 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 MAPK6Q16659 721 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 ZNF410Q86VK4 478 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 TICAM2Q86XR7 235 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 COLGALT2Q8IYK4 626 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 LINC01465Q8N7H1 131 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 LEMD2Q8NC56 503 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 SMARCD2Q92925 531 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 PI4K2AQ9BTU6 479 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 GPR88Q9GZN0 384 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 TRPV4Q9HBA0 871 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 HELLSQ9NRZ9 838 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 DNMT3BQ9UBC3 853 aaKnown RBP9.07□□□□□ -0.96
USP54-211ENST00000474929 ADAM28Q9UKQ2 775 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 ZMYM2Q9UBW7 1377 aa9.07□□□□□ -0.96
USP54-211ENST00000474929 NEDD4P46934 1319 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 TSC2P49815 1807 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 TEX15Q9BXT5 2789 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 DOCK6Q96HP0 2047 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 MEIS2O14770 477 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 EXTL3O43909 919 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 OPHN1O60890 802 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 APBB3O95704 486 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 POMCP01189 267 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 MFAP1P55081 439 aaKnown RBP9.06□□□□□ -0.96
USP54-211ENST00000474929 DSC1Q08554 894 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 ELAVL2Q12926 359 aaKnown RBP9.06□□□□□ -0.96
USP54-211ENST00000474929 TRIM61Q5EBN2 209 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 LMBRD2Q68DH5 695 aaPredicted RBP9.06□□□□□ -0.96
USP54-211ENST00000474929 USP17L6PQ6QN14 398 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 VITQ6UXI7 678 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 ABHD15Q6UXT9 468 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.06□□□□□ -0.96
USP54-211ENST00000474929 LRRC69Q6ZNQ3 347 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 TAS1R1Q7RTX1 841 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 MRPL10Q7Z7H8 261 aaKnown RBP9.06□□□□□ -0.96
USP54-211ENST00000474929 CCDC60Q8IWA6 550 aaPredicted RBP9.06□□□□□ -0.96
USP54-211ENST00000474929 MFSD6LQ8IWD5 586 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 HACE1Q8IYU2 909 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 STAG2Q8N3U4 1231 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 ACDQ96AP0 544 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 WBP1Q96G27 269 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 SEC63Q9UGP8 760 aaKnown RBP9.06□□□□□ -0.96
USP54-211ENST00000474929 EBF1Q9UH73 591 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 MAD2L2Q9UI95 211 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 PCDHB9Q9Y5E1 797 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 PCDHB2Q9Y5E7 798 aa9.06□□□□□ -0.96
USP54-211ENST00000474929 MYH9P35579 1960 aaKnown RBP9.05□□□□□ -0.96
USP54-211ENST00000474929 EML5Q05BV3 1969 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 SLC38A8A6NNN8 435 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 ERVH48-1M5A8F1 160 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 ARNTLO00327 626 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 LRG1P02750 347 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 MS4A1P11836 297 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 CEBPBP17676 345 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 PTPN2P17706 415 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 ENGP17813 658 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 FGFR4P22455 802 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 MAPK8P45983 427 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 DNM2P50570 870 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 HAND2P61296 217 aa9.05□□□□□ -0.96
USP54-211ENST00000474929 IRX4P78413 519 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms