RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 KIAA1024Q9UPX6 916 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 KIF3AQ9Y496 699 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 PCDHB6Q9Y5E3 794 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 USP34Q70CQ2 3546 aa18.29■□□□□ 0.52
CCDC28B-204ENST00000469003 ZFHX2Q9C0A1 2572 aaPredicted RBP18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 LAD1O00515 517 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 C1RP00736 705 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 LIG1P18858 919 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 EFNA5P52803 228 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 TUSC3Q13454 348 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 USP41Q3LFD5 358 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 PRSS33Q8NF86 280 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 SNX29Q8TEQ0 813 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 PRRX2Q99811 253 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 DDX19AQ9NUU7 478 aaKnown RBP18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 SNTG2Q9NY99 539 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 FNIP2Q9P278 1114 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 LIMD1Q9UGP4 676 aa18.28■□□□□ 0.52
CCDC28B-204ENST00000469003 CACNA1HO95180 2353 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 PTGESO14684 152 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 RECQL4O94761 1208 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 BRD1O95696 1058 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 EDN1P05305 212 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 ASGR2P07307 311 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 PRPHP41219 470 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 HSP90AA2PQ14568 343 aaPredicted RBP18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 DCAF4L1Q3SXM0 396 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 EEF1DP3Q658K8 133 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 CYP26C1Q6V0L0 522 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 OTOP3Q7RTS5 596 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 HDAC7Q8WUI4 952 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 RABGGTAQ92696 567 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 ACSF2Q96CM8 615 aaPredicted RBP18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 B3GALT6Q96L58 329 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 KIFC3Q9BVG8 833 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 RHOBTB2Q9BYZ6 727 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 POLD4Q9HCU8 107 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 USP20Q9Y2K6 914 aa18.27■□□□□ 0.52
CCDC28B-204ENST00000469003 MTCL1Q9Y4B5 1905 aaKnown RBP18.27■□□□□ 0.51
CCDC28B-204ENST00000469003 SF3B1O75533 1304 aaKnown RBP eCLIP18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 TADA2AO75478 443 aa18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 THP07101 528 aa18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 CREMQ03060 361 aa18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 IER5LQ5T953 404 aa18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 KRT79Q5XKE5 535 aa18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 RIN2Q8WYP3 895 aaPredicted RBP18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 PAAF1Q9BRP4 392 aa18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 CACNG4Q9UBN1 327 aa18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 DNM3Q9UQ16 869 aa18.26■□□□□ 0.51
CCDC28B-204ENST00000469003 SPTBN4Q9H254 2564 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 CCDC195A0A1B0GUA6 201 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 CASTOR2A6NHX0 329 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 E9PMD0 336 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 PAPLNO95428 1278 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 VCPP55072 806 aaKnown RBP18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 NAB2Q15742 525 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 IL17AQ16552 155 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 NT5DC1Q5TFE4 455 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 ATF7IP2Q5U623 682 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 DTHD1Q6ZMT9 781 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 PLEKHA4Q9H4M7 779 aa18.25■□□□□ 0.51
CCDC28B-204ENST00000469003 PTPRZ1P23471 2315 aaPredicted RBP18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 PP2D1A8MPX8 630 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 K7ERI5 159 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 TGM5O43548 720 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 KIF4AO95239 1232 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 PDGFBP01127 241 aaPredicted RBP18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 AVPR2P30518 371 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 RILPL1Q5EBL4 403 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 RTP2Q5QGT7 225 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 MCTP1Q6DN14 999 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 APBB1IPQ7Z5R6 666 aaPredicted RBP18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 PALB2Q86YC2 1186 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 CXCL16Q9H2A7 254 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 SMOC2Q9H3U7 446 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 WDR6Q9NNW5 1121 aaKnown RBP18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 GDAQ9Y2T3 454 aa18.24■□□□□ 0.51
CCDC28B-204ENST00000469003 PHLPP2Q6ZVD8 1323 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 RFPL2O75678 378 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 SPATA31D3P0C874 917 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 RPL17P18621 184 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 CDC25AP30304 524 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 NPTX2P47972 431 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 PEX3P56589 373 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 ELAVL2Q12926 359 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 LILRA6Q6PI73 481 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 PRSS55Q6UWB4 352 aaPredicted RBP18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 SPATA31D4Q6ZUB0 917 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 GLYCTKQ8IVS8 523 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 DAW1Q8N136 415 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 HASPINQ8TF76 798 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 SMG7Q92540 1137 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 STAMQ92783 540 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 ZNF707Q96C28 371 aaPredicted RBP18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 TMX3Q96JJ7 454 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 DRC1Q96MC2 740 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 TTPALQ9BTX7 342 aa18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 MMTAG2Q9BU76 263 aaKnown RBP18.23■□□□□ 0.51
CCDC28B-204ENST00000469003 TMEM134Q9H6X4 195 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms