RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	USP41	Q3LFD5	358 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	PHLDB3	Q6NSJ2	640 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	PRSS55	Q6UWB4	352 aa	Predicted RBP	12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	GPR152	Q8TDT2	470 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	PIGO	Q8TEQ8	1089 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	RIN2	Q8WYP3	895 aa	Predicted RBP	12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	STAM	Q92783	540 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	CLSTN3	Q9BQT9	956 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	RPP25	Q9BUL9	199 aa	Known RBP	12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	COLEC11	Q9BWP8	271 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	POLR3F	Q9H1D9	316 aa	Predicted RBP	12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	FZD8	Q9H461	694 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	TBC1D17	Q9HA65	648 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	GPRC5C	Q9NQ84	441 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	SLC2A4RG	Q9NR83	387 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	KLK14	Q9P0G3	267 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	ORC3	Q9UBD5	711 aa	Predicted RBP	12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	DPP7	Q9UHL4	492 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	FBXL21	Q9UKT6	434 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	CA14	Q9ULX7	337 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	GTF3C3	Q9Y5Q9	886 aa		12.39	□□□□□ -0.43
PTPN7-204	ENST00000462815	NOTCH4	Q99466	2003 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	POTEM	A6NI47	508 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	ADAM12	O43184	909 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	IGFBP6	P24592	240 aa	Predicted RBP	12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	KRT2	P35908	639 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	TUSC3	Q13454	348 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	HSP90AA2P	Q14568	343 aa	Predicted RBP	12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	CALCRL	Q16602	461 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	FAM187B	Q17R55	369 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	CD300LG	Q6UXG3	332 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	GET4	Q7L5D6	327 aa	Predicted RBP	12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	GLYCTK	Q8IVS8	523 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	MAML2	Q8IZL2	1156 aa	Predicted RBP	12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	NSUN7	Q8NE18	718 aa	Known RBP	12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	LNX1	Q8TBB1	728 aa	Predicted RBP	12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	BSND	Q8WZ55	320 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	FGF14	Q92915	247 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	CCDC113	Q9H0I3	377 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	TMEM60	Q9H2L4	133 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	PDZD7	Q9H5P4	517 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	TTC12	Q9H892	705 aa	Predicted RBP	12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	PCDHA12	Q9UN75	941 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	NUMBL	Q9Y6R0	609 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	DOCK6	Q96HP0	2047 aa		12.38	□□□□□ -0.43
PTPN7-204	ENST00000462815	PATJ	Q8NI35	1801 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	MYH15	Q9Y2K3	1946 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	BTBD18	B2RXH4	712 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	USO1	O60763	962 aa	Known RBP	12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	MED24	O75448	989 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	BAG4	O95429	457 aa	Known RBP	12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	XRCC6	P12956	609 aa	Known RBP eCLIP	12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	XBP1	P17861	261 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	NTHL1	P78549	312 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	ME3	Q16798	604 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	POTEH	Q6S545	545 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	ST13P5	Q8NFI4	369 aa	Predicted RBP	12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	PIK3R5	Q8WYR1	880 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	GTF3C6	Q969F1	213 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	PRIMPOL	Q96LW4	560 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	DDX23	Q9BUQ8	820 aa	Known RBP	12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	TRIM6	Q9C030	488 aa	Predicted RBP	12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	ARHGEF3	Q9NR81	526 aa		12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	SF3B1	O75533	1304 aa	Known RBP eCLIP	12.37	□□□□□ -0.43
PTPN7-204	ENST00000462815	OTOGL	Q3ZCN5	2332 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	CASTOR2	A6NHX0	329 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	NEMF	O60524	1076 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	NR1I2	O75469	434 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	DCN	P07585	359 aa	Known RBP	12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	POU2F2	P09086	479 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	HOXA9	P31269	272 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	TXK	P42681	527 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	STARD6	P59095	220 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	CREM	Q03060	361 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	ELMSAN1	Q6PJG2	1045 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	PARM1	Q6UWI2	310 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	RSPO2	Q6UXX9	243 aa	Predicted RBP	12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	ERMP1	Q7Z2K6	904 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	GRASP	Q7Z6J2	395 aa	Predicted RBP	12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	CATSPER3	Q86XQ3	398 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	HACE1	Q8IYU2	909 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	NECAB1	Q8N987	351 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	PJA1	Q8NG27	643 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	HASPIN	Q8TF76	798 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	FOXQ1	Q9C009	403 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	PRMT7	Q9NVM4	692 aa	Predicted RBP	12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	USP20	Q9Y2K6	914 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815		R4GN57	208 aa		12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	EP300	Q09472	2414 aa	Predicted RBP	12.36	□□□□□ -0.43
PTPN7-204	ENST00000462815	COL4A2	P08572	1712 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	SHISA7	A6NL88	538 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	STK25	O00506	426 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	MARCH6	O60337	910 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	JAK2	O60674	1132 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	LRRN2	O75325	713 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	TADA2A	O75478	443 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	RECQL4	O94761	1208 aa		12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	HNRNPA1	P09651	372 aa	Known RBP eCLIP	12.35	□□□□□ -0.43
PTPN7-204	ENST00000462815	SP9	P0CG40	484 aa		12.35	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms