RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 MATR3P43243 847 aaKnown RBP eCLIP11.97□□□□□ -0.49
SCN9A-205ENST00000454569 ZNF75DP51815 510 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 MARSP56192 900 aaKnown RBP11.97□□□□□ -0.49
SCN9A-205ENST00000454569 CDC42EP1Q00587 391 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 NFX1Q12986 1120 aaKnown RBP11.97□□□□□ -0.49
SCN9A-205ENST00000454569 RALGAPA2Q2PPJ7 1873 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 ZNF568Q3ZCX4 644 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 CCDC40Q4G0X9 1142 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 C1orf53Q5VUE5 145 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 SARM1Q6SZW1 724 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 MPZL3Q6UWV2 235 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 RSPH3Q86UC2 560 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 FAM186BQ8IYM0 893 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 THNSL1Q8IYQ7 743 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 VWCEQ96DN2 955 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 SCLYQ96I15 445 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 PRIMPOLQ96LW4 560 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 MSTO1Q9BUK6 570 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 NOC4LQ9BVI4 516 aaKnown RBP11.97□□□□□ -0.49
SCN9A-205ENST00000454569 PPP1R12CQ9BZL4 782 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 WNT8AQ9H1J5 351 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 ERVK-5Q9HDB9 667 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 AGPAT5Q9NUQ2 364 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 RNF19AQ9NV58 838 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 METRNQ9UJH8 293 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 PADI3Q9ULW8 664 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 HES2Q9Y543 173 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 MICAL3Q7RTP6 2002 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 PTPRJQ12913 1337 aa11.97□□□□□ -0.49
SCN9A-205ENST00000454569 A0A1B0GTH6 734 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 M0QZ92 97 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 EVI5O60447 810 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 RPS6KA5O75582 802 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 NPTXRO95502 500 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 SERPINC1P01008 464 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 SCP2P22307 547 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 EEF1GP26641 437 aaKnown RBP11.96□□□□□ -0.49
SCN9A-205ENST00000454569 CYP2C18P33260 490 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 PSMC2P35998 433 aaKnown RBP11.96□□□□□ -0.49
SCN9A-205ENST00000454569 MTIF2P46199 727 aaKnown RBP11.96□□□□□ -0.49
SCN9A-205ENST00000454569 CCL23P55773 120 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 UBASH3AP57075 661 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 SNRPFP62306 86 aaKnown RBP11.96□□□□□ -0.49
SCN9A-205ENST00000454569 RBL2Q08999 1139 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 MYBPC2Q14324 1141 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 NR1I3Q14994 352 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 SNRNP35Q16560 246 aaKnown RBP11.96□□□□□ -0.49
SCN9A-205ENST00000454569 RTN4RL1Q86UN2 441 aaPredicted RBP11.96□□□□□ -0.49
SCN9A-205ENST00000454569 GPD1LQ8N335 351 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 GOLGA5Q8TBA6 731 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 TRIM5Q9C035 493 aa11.96□□□□□ -0.49
SCN9A-205ENST00000454569 TOPORSQ9NS56 1045 aaPredicted RBP11.96□□□□□ -0.49
SCN9A-205ENST00000454569 CGNQ9P2M7 1197 aaKnown RBP11.96□□□□□ -0.49
SCN9A-205ENST00000454569 PIN4Q9Y237 131 aaKnown RBP11.96□□□□□ -0.49
SCN9A-205ENST00000454569 SCN1AP35498 2009 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 TDRD15B5MCY1 1934 aaKnown RBP11.96□□□□□ -0.5
SCN9A-205ENST00000454569 TRIM43BA6NCK2 446 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 MEIS3P2A8K0S8 358 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 SLC16A3O15427 465 aaKnown RBP11.96□□□□□ -0.5
SCN9A-205ENST00000454569 EXTL3O43909 919 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 SELPP16109 830 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 SFPQP23246 707 aaKnown RBP eCLIP11.96□□□□□ -0.5
SCN9A-205ENST00000454569 ABCD1P33897 745 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 KLK7P49862 253 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 APBA1Q02410 837 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 PPP3CAQ08209 521 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 NOLC1Q14978 699 aaKnown RBP eCLIP11.96□□□□□ -0.5
SCN9A-205ENST00000454569 LMBRD2Q68DH5 695 aaPredicted RBP11.96□□□□□ -0.5
SCN9A-205ENST00000454569 SLFN12LQ6IEE8 588 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 LRRC8DQ7L1W4 858 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 NECAB2Q7Z6G3 386 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 FRMD5Q7Z6J6 570 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 PTCD2Q8WV60 388 aaKnown RBP11.96□□□□□ -0.5
SCN9A-205ENST00000454569 ZNF516Q92618 1163 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 SLC35C1Q96A29 364 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 TRIM43Q96BQ3 446 aaPredicted RBP11.96□□□□□ -0.5
SCN9A-205ENST00000454569 MFSD14AQ96MC6 490 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 TOX2Q96NM4 488 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 PDE11AQ9HCR9 933 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 ARMCX3Q9UH62 379 aaPredicted RBP11.96□□□□□ -0.5
SCN9A-205ENST00000454569 CPSF3Q9UKF6 684 aaKnown RBP11.96□□□□□ -0.5
SCN9A-205ENST00000454569 TBX21Q9UL17 535 aa11.96□□□□□ -0.5
SCN9A-205ENST00000454569 PTPRSQ13332 1948 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 LRRIQ3A6PVS8 624 aaPredicted RBP11.95□□□□□ -0.5
SCN9A-205ENST00000454569 DCDC2CA8MYV0 355 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 OGTO15294 1046 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 STAG3L1P0CL83 205 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 EPB41P11171 864 aaKnown RBP11.95□□□□□ -0.5
SCN9A-205ENST00000454569 MCCD1P59942 119 aaPredicted RBP11.95□□□□□ -0.5
SCN9A-205ENST00000454569 TPM4P67936 248 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 SPAG1Q07617 926 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 CYP24A1Q07973 514 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 KCNH2Q12809 1159 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 DSC3Q14574 896 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 ENOX2Q16206 610 aaKnown RBP11.95□□□□□ -0.5
SCN9A-205ENST00000454569 SMG8Q8ND04 991 aaKnown RBP11.95□□□□□ -0.5
SCN9A-205ENST00000454569 PARD3BQ8TEW8 1205 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 LINC01599Q8WXQ3 324 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 ELMO3Q96BJ8 720 aa11.95□□□□□ -0.5
SCN9A-205ENST00000454569 CCDC127Q96BQ5 260 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms