RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 CPSF3Q9UKF6 684 aaKnown RBP20.05■□□□□ 0.8
HDAC6-208ENST00000438518 LRFN2Q9ULH4 789 aa20.05■□□□□ 0.8
HDAC6-208ENST00000438518 FRMD4BQ9Y2L6 1034 aa20.05■□□□□ 0.8
HDAC6-208ENST00000438518 GIT1Q9Y2X7 761 aa20.05■□□□□ 0.8
HDAC6-208ENST00000438518 PCDHB7Q9Y5E2 793 aa20.05■□□□□ 0.8
HDAC6-208ENST00000438518 TRIM49BA6NDI0 452 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 ZNF233A6NK53 670 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 H0YGN5 161 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 SLC16A3O15427 465 aaKnown RBP20.04■□□□□ 0.8
HDAC6-208ENST00000438518 GNA14O95837 355 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 HARSP12081 509 aaKnown RBP20.04■□□□□ 0.8
HDAC6-208ENST00000438518 PMS1P54277 932 aaKnown RBP20.04■□□□□ 0.8
HDAC6-208ENST00000438518 EPHB4P54760 987 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 SURF1Q15526 300 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 OTOP2Q7RTS6 562 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 USP37Q86T82 979 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 THNSL1Q8IYQ7 743 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 CSGALNACT2Q8N6G5 542 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 TOP1MTQ969P6 601 aa20.04■□□□□ 0.8
HDAC6-208ENST00000438518 GZF1Q9H116 711 aaPredicted RBP20.04■□□□□ 0.8
HDAC6-208ENST00000438518 NXF3Q9H4D5 531 aaKnown RBP20.04■□□□□ 0.8
HDAC6-208ENST00000438518 IKBKBO14920 756 aa20.03■□□□□ 0.8
HDAC6-208ENST00000438518 PSMC2P35998 433 aaKnown RBP20.03■□□□□ 0.8
HDAC6-208ENST00000438518 CYP2J2P51589 502 aa20.03■□□□□ 0.8
HDAC6-208ENST00000438518 MYL5Q02045 173 aa20.03■□□□□ 0.8
HDAC6-208ENST00000438518 SNRNP35Q16560 246 aaKnown RBP20.03■□□□□ 0.8
HDAC6-208ENST00000438518 TPD52L1Q16890 204 aaPredicted RBP20.03■□□□□ 0.8
HDAC6-208ENST00000438518 RASIP1Q5U651 963 aa20.03■□□□□ 0.8
HDAC6-208ENST00000438518 SPATA1Q5VX52 437 aa20.03■□□□□ 0.8
HDAC6-208ENST00000438518 C11orf57Q6ZUT1 292 aaPredicted RBP20.03■□□□□ 0.8
HDAC6-208ENST00000438518 FILIP1Q7Z7B0 1213 aa20.03■□□□□ 0.8
HDAC6-208ENST00000438518 CRIPAKQ8N1N5 446 aa20.03■□□□□ 0.8
HDAC6-208ENST00000438518 PCIF1Q9H4Z3 704 aa20.03■□□□□ 0.8
HDAC6-208ENST00000438518 RPF1Q9H9Y2 349 aaKnown RBP20.03■□□□□ 0.8
HDAC6-208ENST00000438518 SNTG2Q9NY99 539 aa20.03■□□□□ 0.8
HDAC6-208ENST00000438518 PDCD11Q14690 1871 aaKnown RBP20.03■□□□□ 0.8
HDAC6-208ENST00000438518 PTPRSQ13332 1948 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 ZBBXA8MT70 800 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 SMTNL1A8MU46 457 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 INPPL1O15357 1258 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 IL18RAPO95256 599 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 ADRB2P07550 413 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 EPB41P11171 864 aaKnown RBP20.02■□□□□ 0.8
HDAC6-208ENST00000438518 ATF7P17544 494 aaPredicted RBP20.02■□□□□ 0.8
HDAC6-208ENST00000438518 ZNF165P49910 485 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 STX17P56962 302 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.02■□□□□ 0.8
HDAC6-208ENST00000438518 LRRC55Q6ZSA7 311 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 INTS8Q75QN2 995 aaKnown RBP20.02■□□□□ 0.8
HDAC6-208ENST00000438518 FAM114A1Q8IWE2 563 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 BRSK2Q8IWQ3 736 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 CEP120Q8N960 986 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 DUSP9Q99956 384 aaKnown RBP20.02■□□□□ 0.8
HDAC6-208ENST00000438518 FAM213AQ9BRX8 229 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 UBE2OQ9C0C9 1292 aaKnown RBP20.02■□□□□ 0.8
HDAC6-208ENST00000438518 TSPY26PQ9H489 355 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 THAP9Q9H5L6 903 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 ASB7Q9H672 318 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 RSAD1Q9HA92 442 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 METTL14Q9HCE5 456 aaKnown RBP20.02■□□□□ 0.8
HDAC6-208ENST00000438518 RBAKQ9NYW8 714 aaPredicted RBP20.02■□□□□ 0.8
HDAC6-208ENST00000438518 SLC4A7Q9Y6M7 1214 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 COL4A6Q14031 1691 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 ANK1P16157 1881 aa20.02■□□□□ 0.8
HDAC6-208ENST00000438518 TNRC18O15417 2968 aaPredicted RBP20.01■□□□□ 0.79
HDAC6-208ENST00000438518 RECQL4O94761 1208 aa20.01■□□□□ 0.79
HDAC6-208ENST00000438518 ACOT2P49753 483 aa20.01■□□□□ 0.79
HDAC6-208ENST00000438518 PPP2R3AQ06190 1150 aa20.01■□□□□ 0.79
HDAC6-208ENST00000438518 CEP135Q66GS9 1140 aa20.01■□□□□ 0.79
HDAC6-208ENST00000438518 GLB1LQ6UWU2 654 aa20.01■□□□□ 0.79
HDAC6-208ENST00000438518 CRELD2Q6UXH1 353 aaPredicted RBP20.01■□□□□ 0.79
HDAC6-208ENST00000438518 AGMOQ6ZNB7 445 aa20.01■□□□□ 0.79
HDAC6-208ENST00000438518 NT5DC4Q86YG4 428 aa20.01■□□□□ 0.79
HDAC6-208ENST00000438518 ABI1Q8IZP0 508 aa20.01■□□□□ 0.79
HDAC6-208ENST00000438518 SAAL1Q96ER3 474 aa20.01■□□□□ 0.79
HDAC6-208ENST00000438518 MRPL9Q9BYD2 267 aaKnown RBP20.01■□□□□ 0.79
HDAC6-208ENST00000438518 KANSL3Q9P2N6 904 aa20.01■□□□□ 0.79
HDAC6-208ENST00000438518 TDRD15B5MCY1 1934 aaKnown RBP20■□□□□ 0.79
HDAC6-208ENST00000438518 PRKCSHP14314 528 aaPredicted RBP20■□□□□ 0.79
HDAC6-208ENST00000438518 MARSP56192 900 aaKnown RBP20■□□□□ 0.79
HDAC6-208ENST00000438518 XKR4Q5GH76 650 aa20■□□□□ 0.79
HDAC6-208ENST00000438518 FAM186BQ8IYM0 893 aa20■□□□□ 0.79
HDAC6-208ENST00000438518 FAM200AQ8TCP9 573 aa20■□□□□ 0.79
HDAC6-208ENST00000438518 SNX27Q96L92 541 aa20■□□□□ 0.79
HDAC6-208ENST00000438518 RNPC3Q96LT9 517 aaKnown RBP20■□□□□ 0.79
HDAC6-208ENST00000438518 RPS6KC1Q96S38 1066 aa20■□□□□ 0.79
HDAC6-208ENST00000438518 CNTN3Q9P232 1028 aa20■□□□□ 0.79
HDAC6-208ENST00000438518 PARP2Q9UGN5 583 aa20■□□□□ 0.79
HDAC6-208ENST00000438518 DERAQ9Y315 318 aa20■□□□□ 0.79
HDAC6-208ENST00000438518 HES2Q9Y543 173 aa20■□□□□ 0.79
HDAC6-208ENST00000438518 FNDC1Q4ZHG4 1894 aaPredicted RBP20■□□□□ 0.79
HDAC6-208ENST00000438518 TTC26A0AVF1 554 aa19.99■□□□□ 0.79
HDAC6-208ENST00000438518 BECN2A8MW95 431 aa19.99■□□□□ 0.79
HDAC6-208ENST00000438518 XPOTO43592 962 aaKnown RBP19.99■□□□□ 0.79
HDAC6-208ENST00000438518 DGKIO75912 1065 aa19.99■□□□□ 0.79
HDAC6-208ENST00000438518 AKAP3O75969 853 aa19.99■□□□□ 0.79
HDAC6-208ENST00000438518 KRT13P13646 458 aa19.99■□□□□ 0.79
HDAC6-208ENST00000438518 TNFSF9P41273 254 aa19.99■□□□□ 0.79
HDAC6-208ENST00000438518 MCCD1P59942 119 aaPredicted RBP19.99■□□□□ 0.79
HDAC6-208ENST00000438518 OSTNP61366 133 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms