RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 COBLL1Q53SF7 1204 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 ZBTB41Q5SVQ8 909 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 CRELD2Q6UXH1 353 aaPredicted RBP13.59□□□□□ -0.23
USP40-205ENST00000430158 ZBTB33Q86T24 672 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 ZSWIM2Q8NEG5 633 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 TMEM174Q8WUU8 243 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 CLP1Q92989 425 aaKnown RBP13.59□□□□□ -0.23
USP40-205ENST00000430158 PGBD4Q96DM1 585 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 NKX2-4Q9H2Z4 354 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 CWH43Q9H720 699 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 SNTG2Q9NY99 539 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 HCSTQ9UBK5 93 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 MAN1B1Q9UKM7 699 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 LRFN2Q9ULH4 789 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 GIT1Q9Y2X7 761 aa13.59□□□□□ -0.23
USP40-205ENST00000430158 PRRC2BQ5JSZ5 2229 aaKnown RBP13.58□□□□□ -0.24
USP40-205ENST00000430158 CLDN3O15551 220 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 HOXA2O43364 376 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 ITGA4P13612 1032 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 AKAP5P24588 427 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 MORC3Q14149 939 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 NAB2Q15742 525 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 RNF169Q8NCN4 708 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 HELQQ8TDG4 1101 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 CCDC34Q96HJ3 373 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 ZFP42Q96MM3 310 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 YME1L1Q96TA2 773 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 GAD1Q99259 594 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 ADPGKQ9BRR6 497 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 ZBED2Q9BTP6 218 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 TTYH1Q9H313 450 aaPredicted RBP13.58□□□□□ -0.24
USP40-205ENST00000430158 TMEM206Q9H813 350 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 RSAD1Q9HA92 442 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 KIAA1468Q9P260 1216 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 PLAGL2Q9UPG8 496 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 EXOC7Q9UPT5 735 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 MRPL42Q9Y6G3 142 aaKnown RBP13.58□□□□□ -0.24
USP40-205ENST00000430158 BRWD1Q9NSI6 2320 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 CDH23Q9H251 3354 aa13.58□□□□□ -0.24
USP40-205ENST00000430158 ARL5CA6NH57 179 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 TBKBP1A7MCY6 615 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 GOLGA6L22H0YM25 854 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 PTGESO14684 152 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 OGTO15294 1046 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 RECQL4O94761 1208 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 SMC2O95347 1197 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 IBSPP21815 317 aaPredicted RBP13.57□□□□□ -0.24
USP40-205ENST00000430158 GARTP22102 1010 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 TNFSF9P41273 254 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 ERVK-21P61565 698 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 CAMK4Q16566 473 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 KNOP1Q1ED39 458 aaKnown RBP13.57□□□□□ -0.24
USP40-205ENST00000430158 SLC10A6Q3KNW5 377 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 ZCWPW2Q504Y3 356 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 SEZ6Q53EL9 994 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 NOMO2Q5JPE7 1267 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 ZNF658Q5TYW1 1059 aaPredicted RBP13.57□□□□□ -0.24
USP40-205ENST00000430158 SLFN12LQ6IEE8 588 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 GPR153Q6NV75 609 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 RBM43Q6ZSC3 357 aaKnown RBP13.57□□□□□ -0.24
USP40-205ENST00000430158 STXBP4Q6ZWJ1 553 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 NELFCDQ8IXH7 590 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 C12orf56Q8IXR9 622 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 SMYD4Q8IYR2 804 aaPredicted RBP13.57□□□□□ -0.24
USP40-205ENST00000430158 GUF1Q8N442 669 aaKnown RBP13.57□□□□□ -0.24
USP40-205ENST00000430158 RSPH1Q8WYR4 309 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 SMARCE1Q969G3 411 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 TIFAQ96CG3 184 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 BICD1Q96G01 975 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 CBWD1Q9BRT8 395 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 TCHPQ9BT92 498 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 TRIM6Q9C030 488 aaPredicted RBP13.57□□□□□ -0.24
USP40-205ENST00000430158 GBP3Q9H0R5 595 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 UBN1Q9NPG3 1134 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 AGPAT3Q9NRZ7 376 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 TYW1Q9NV66 732 aaKnown RBP13.57□□□□□ -0.24
USP40-205ENST00000430158 TBC1D13Q9NVG8 400 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 DMAC2Q9NW81 257 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 ANKFY1Q9P2R3 1169 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 MSRAQ9UJ68 235 aa13.57□□□□□ -0.24
USP40-205ENST00000430158 HOOK1Q9UJC3 728 aaKnown RBP13.57□□□□□ -0.24
USP40-205ENST00000430158 CPSF3Q9UKF6 684 aaKnown RBP13.57□□□□□ -0.24
USP40-205ENST00000430158 TTC26A0AVF1 554 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 CLTAP09496 248 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 PRCPP42785 496 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 SNRPFP62306 86 aaKnown RBP13.56□□□□□ -0.24
USP40-205ENST00000430158 POU5F1Q01860 360 aaKnown RBP13.56□□□□□ -0.24
USP40-205ENST00000430158 DSC1Q08554 894 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 BTG3Q14201 252 aaPredicted RBP13.56□□□□□ -0.24
USP40-205ENST00000430158 ENOX2Q16206 610 aaKnown RBP13.56□□□□□ -0.24
USP40-205ENST00000430158 TMEM132AQ24JP5 1023 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 PAN2Q504Q3 1202 aaKnown RBP13.56□□□□□ -0.24
USP40-205ENST00000430158 GLB1LQ6UWU2 654 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 ZNF280BQ86YH2 543 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 THNSL1Q8IYQ7 743 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 ADSSL1Q8N142 457 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 SNX27Q96L92 541 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 FBXL18Q96ME1 805 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 APOL6Q9BWW8 343 aa13.56□□□□□ -0.24
USP40-205ENST00000430158 SEMA6BQ9H3T3 888 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms