RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 GNAT2P19087 354 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 FPR1P21462 350 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 PCSK1P29120 753 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 FLT3LGP49771 235 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 CDC42EP1Q00587 391 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 U2AF1Q01081 240 aaKnown RBP eCLIP5.37□□□□□ -1.55
USP40-204ENST00000427947 TARDBPQ13148 414 aaKnown RBP eCLIP5.37□□□□□ -1.55
USP40-204ENST00000427947 GTF2H3Q13889 308 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 ICAM4Q14773 271 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 PGS1Q32NB8 556 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 MFSD14BQ5SR56 506 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 ERICH6BQ5W0A0 696 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 MFSD5Q6N075 450 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 EPM2AIP1Q7L775 607 aaPredicted RBP5.37□□□□□ -1.55
USP40-204ENST00000427947 ZNF572Q7Z3I7 529 aaPredicted RBP5.37□□□□□ -1.55
USP40-204ENST00000427947 XYLT1Q86Y38 959 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 DRC7Q8IY82 874 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 GRAMD1CQ8IYS0 662 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 PRR18Q8N4B5 295 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 ZGPATQ8N5A5 531 aaKnown RBP5.37□□□□□ -1.55
USP40-204ENST00000427947 Q8TCH9 128 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 LOXL4Q96JB6 756 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 TMX3Q96JJ7 454 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 MPHOSPH9Q99550 1183 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 MAP3K14Q99558 947 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 SLC12A5Q9H2X9 1139 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 ANLNQ9NQW6 1124 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.37□□□□□ -1.55
USP40-204ENST00000427947 RUVBL1Q9Y265 456 aaKnown RBP5.37□□□□□ -1.55
USP40-204ENST00000427947 PCDHB1Q9Y5F3 818 aa5.37□□□□□ -1.55
USP40-204ENST00000427947 CFAP20Q9Y6A4 193 aaKnown RBP5.37□□□□□ -1.55
USP40-204ENST00000427947 K7ESM1 405 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 SGTAO43765 313 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 ZNF623O75123 536 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 AMY1AP04745 511 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 RAP2AP10114 183 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 ALOX15P16050 662 aaPredicted RBP5.36□□□□□ -1.55
USP40-204ENST00000427947 ATF3P18847 181 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 DDCP20711 480 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 COMTP21964 271 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 LPOP22079 712 aaPredicted RBP5.36□□□□□ -1.55
USP40-204ENST00000427947 ALDH1A3P47895 512 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 HHEXQ03014 270 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 SP140Q13342 867 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 AFMIDQ63HM1 303 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 TTC7BQ86TV6 843 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 ELOA2Q8IYF1 753 aaPredicted RBP5.36□□□□□ -1.55
USP40-204ENST00000427947 MB21D1Q8N884 522 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 DNERQ8NFT8 737 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 CXorf38Q8TB03 319 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 HPS3Q969F9 1004 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 MVB12AQ96EY5 273 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 CPPED1Q9BRF8 314 aaPredicted RBP5.36□□□□□ -1.55
USP40-204ENST00000427947 ST6GALNAC2Q9UJ37 374 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 HDAC5Q9UQL6 1122 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 ACTL7AQ9Y615 435 aa5.36□□□□□ -1.55
USP40-204ENST00000427947 ATRNL1Q5VV63 1379 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 CAPN14A8MX76 684 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 B5MCH6 92 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 IPO13O94829 963 aaKnown RBP5.35□□□□□ -1.55
USP40-204ENST00000427947 DSC2Q02487 901 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 MTM1Q13496 603 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 MINDY4Q4G0A6 757 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 FAM47AQ5JRC9 791 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 ATAT1Q5SQI0 421 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 ZNF585AQ6P3V2 769 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 APBB1IPQ7Z5R6 666 aaPredicted RBP5.35□□□□□ -1.55
USP40-204ENST00000427947 C14orf80Q86SX3 495 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 SGMS1Q86VZ5 419 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 DIS3LQ8TF46 1054 aaKnown RBP5.35□□□□□ -1.55
USP40-204ENST00000427947 CASKIN2Q8WXE0 1202 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 ST8SIA2Q92186 375 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 RELTQ969Z4 430 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 BORCS6Q96GS4 357 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 CLPTM1LQ96KA5 538 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 KCNH6Q9H252 994 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 DEF6Q9H4E7 631 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 MOCS1Q9NZB8 636 aa5.35□□□□□ -1.55
USP40-204ENST00000427947 CXorf49A8MYA2 514 aaPredicted RBP5.34□□□□□ -1.55
USP40-204ENST00000427947 PRR5-ARHGAP8B1AHC4 643 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 TEX33O43247 280 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 FOXD2O60548 495 aaPredicted RBP5.34□□□□□ -1.55
USP40-204ENST00000427947 MFAP3LO75121 409 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 HK1P19367 917 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 ACO1P21399 889 aaKnown RBP5.34□□□□□ -1.55
USP40-204ENST00000427947 ATP8B2P98198 1209 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 PTH1RQ03431 593 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 RAB39AQ14964 217 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 HS1BP3Q53T59 392 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 LCE3BQ5TA77 95 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 ANKS6Q68DC2 871 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 B3GNT9Q6UX72 402 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 GADL1Q6ZQY3 521 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 FAM83AQ86UY5 434 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 ANKRD35Q8N283 1001 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 ZNF808Q8N4W9 903 aaPredicted RBP5.34□□□□□ -1.55
USP40-204ENST00000427947 CAMKK1Q8N5S9 505 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 CHST13Q8NET6 341 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 SLC35B2Q8TB61 432 aa5.34□□□□□ -1.55
USP40-204ENST00000427947 SLC35G2Q8TBE7 412 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms