RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 DEPDC5O75140 1603 aa18.33■□□□□ 0.52
PHRF1-202ENST00000413872 SSU72P8A0A1W2PR75 194 aa18.33■□□□□ 0.52
PHRF1-202ENST00000413872 EPHX2P34913 555 aa18.33■□□□□ 0.52
PHRF1-202ENST00000413872 GMCL1P1Q8NEA9 526 aa18.33■□□□□ 0.52
PHRF1-202ENST00000413872 NFU1Q9UMS0 254 aa18.33■□□□□ 0.52
PHRF1-202ENST00000413872 CTSHP09668 335 aa18.33■□□□□ 0.52
PHRF1-202ENST00000413872 NME3Q13232 169 aa18.33■□□□□ 0.52
PHRF1-202ENST00000413872 EFCAB12Q6NXP0 572 aa18.33■□□□□ 0.52
PHRF1-202ENST00000413872 TRIM67Q6ZTA4 783 aa18.33■□□□□ 0.52
PHRF1-202ENST00000413872 NOVA2Q9UNW9 492 aaKnown RBP18.33■□□□□ 0.52
PHRF1-202ENST00000413872 NPHP3-ACAD11A0A0J9YXS1 232 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 KLRK1P26718 216 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 ACOT2P49753 483 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 MUM1Q2TAK8 710 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 NOTUMQ6P988 496 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 FOXP2O15409 715 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 TMTC4Q5T4D3 741 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 ZC3H15Q8WU90 426 aaKnown RBP18.32■□□□□ 0.52
PHRF1-202ENST00000413872 EFHD1Q9BUP0 239 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 TMX2Q9Y320 296 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 CAPN7Q9Y6W3 813 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 KPNA7A9QM74 516 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 COPEO14579 308 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 CYP26A1O43174 497 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 ACSL3O95573 720 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 GRIK1P39086 918 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 CDH6P55285 790 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 PLEKHH3Q7Z736 793 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 TAAR1Q96RJ0 339 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 RTFDC1Q9BY42 306 aaPredicted RBP18.32■□□□□ 0.52
PHRF1-202ENST00000413872 ITIH6Q6UXX5 1313 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 PNPLA4P41247 253 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 SLC7A5Q01650 507 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 OSBPL9Q96SU4 736 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 KIF2CQ99661 725 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 SPON2Q9BUD6 331 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 TMEM131LA2VDJ0 1609 aa18.32■□□□□ 0.52
PHRF1-202ENST00000413872 NWD1Q149M9 1564 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 MOCS2O96007 188 aaPredicted RBP18.31■□□□□ 0.52
PHRF1-202ENST00000413872 CYP11B2P19099 503 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 ACADSBP45954 432 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 ZKSCAN8Q15776 578 aaPredicted RBP18.31■□□□□ 0.52
PHRF1-202ENST00000413872 YAF2Q8IY57 180 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 EXTL3O43909 919 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 NR1D1P20393 614 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 CASP8Q14790 479 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 DCAF4L1Q3SXM0 396 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 TTC23LQ6PF05 361 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 FRA10AC1Q70Z53 315 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 PDCD6IPQ8WUM4 868 aaKnown RBP18.31■□□□□ 0.52
PHRF1-202ENST00000413872 ASIC4Q96FT7 647 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 NVLO15381 856 aaKnown RBP18.31■□□□□ 0.52
PHRF1-202ENST00000413872 GBA2Q9HCG7 927 aaPredicted RBP18.31■□□□□ 0.52
PHRF1-202ENST00000413872 TMEM8AQ9HCN3 771 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 TUBE1Q9UJT0 475 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 A0A1B0GTH6 734 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 SEC31AO94979 1220 aaKnown RBP18.31■□□□□ 0.52
PHRF1-202ENST00000413872 MX2P20592 715 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 RCN2Q14257 317 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 ZNF235Q14590 738 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 ZNF484Q5JVG2 852 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 BCL9O00512 1426 aa18.31■□□□□ 0.52
PHRF1-202ENST00000413872 STK25O00506 426 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 APOL1O14791 398 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 BAG2O95816 211 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 CXCL9Q07325 125 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 ADCY1Q08828 1119 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 SPARCL1Q14515 664 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 MMTAG2Q9BU76 263 aaKnown RBP18.3■□□□□ 0.52
PHRF1-202ENST00000413872 PLEKHA5Q9HAU0 1116 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 POLR1AO95602 1720 aaPredicted RBP18.3■□□□□ 0.52
PHRF1-202ENST00000413872 UBE2Q2LH0YL09 131 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 CHGBP05060 677 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 CLTAP09496 248 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 DHX34Q14147 1143 aaKnown RBP18.3■□□□□ 0.52
PHRF1-202ENST00000413872 LMBRD2Q68DH5 695 aaPredicted RBP18.3■□□□□ 0.52
PHRF1-202ENST00000413872 TTC8Q8TAM2 541 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 IRAK4Q9NWZ3 460 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 FAM205AQ6ZU69 1335 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 ALDH1A1P00352 501 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 PLA2G4FQ68DD2 849 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 NOP9Q86U38 636 aaKnown RBP18.3■□□□□ 0.52
PHRF1-202ENST00000413872 TRIM59Q8IWR1 403 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 ZKSCAN4Q969J2 545 aaPredicted RBP18.3■□□□□ 0.52
PHRF1-202ENST00000413872 SIK2Q9H0K1 926 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 LCP1P13796 627 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 ACTR2P61160 394 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 SLC18A3Q16572 532 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 NT5C1AQ9BXI3 368 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 PPP1R9AQ9ULJ8 1098 aa18.3■□□□□ 0.52
PHRF1-202ENST00000413872 SNX2O60749 519 aa18.29■□□□□ 0.52
PHRF1-202ENST00000413872 COL5A2P05997 1499 aaPredicted RBP18.29■□□□□ 0.52
PHRF1-202ENST00000413872 TCF7P36402 384 aaPredicted RBP18.29■□□□□ 0.52
PHRF1-202ENST00000413872 WDR75Q8IWA0 830 aaKnown RBP18.29■□□□□ 0.52
PHRF1-202ENST00000413872 ZBTB18Q99592 522 aa18.29■□□□□ 0.52
PHRF1-202ENST00000413872 POLRMTO00411 1230 aaKnown RBP18.29■□□□□ 0.52
PHRF1-202ENST00000413872 FDPSP14324 419 aaKnown RBP18.29■□□□□ 0.52
PHRF1-202ENST00000413872 CRLF3Q8IUI8 442 aa18.29■□□□□ 0.52
PHRF1-202ENST00000413872 RBBP8NLQ8NC74 664 aaPredicted RBP18.29■□□□□ 0.52
PHRF1-202ENST00000413872 TXLNGQ9NUQ3 528 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms