RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SNF8Q96H20 258 aa19.77■□□□□ 0.75
USP48-204ENST00000400301 RASA4BC9J798 803 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 RASA4O43374 803 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 MED7O43513 233 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 ERVK-9P63128 1117 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 ARSHQ5FYA8 562 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 HP1BP3Q5SSJ5 553 aaPredicted RBP19.76■□□□□ 0.75
USP48-204ENST00000400301 BTBD6Q96KE9 485 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 CIITAP33076 1130 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 MAPK7Q13164 816 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 PTGISQ16647 500 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 KDM7AQ6ZMT4 941 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 CENPUQ71F23 418 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 ZSWIM1Q9BR11 485 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 PHF20L1A8MW92 1017 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 STK10O94804 968 aaKnown RBP19.76■□□□□ 0.75
USP48-204ENST00000400301 SYF2O95926 243 aaKnown RBP19.76■□□□□ 0.75
USP48-204ENST00000400301 INHBAP08476 426 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 SLC8A1P32418 973 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 CORO7P57737 925 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 ZNF667Q5HYK9 610 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 TRIM72Q6ZMU5 477 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 ETNPPLQ8TBG4 499 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 TEX13BQ9BXU2 312 aa19.76■□□□□ 0.75
USP48-204ENST00000400301 RPF1Q9H9Y2 349 aaKnown RBP19.76■□□□□ 0.75
USP48-204ENST00000400301 SPATA31C1P0DKV0 1188 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 PRKCEQ02156 737 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 TBC1D1Q86TI0 1168 aaPredicted RBP19.75■□□□□ 0.75
USP48-204ENST00000400301 PSPC1Q8WXF1 523 aaKnown RBP19.75■□□□□ 0.75
USP48-204ENST00000400301 SLC5A5Q92911 643 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 GTF3C4Q9UKN8 822 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 TRPM3Q9HCF6 1732 aaPredicted RBP19.75■□□□□ 0.75
USP48-204ENST00000400301 ADAMTSL3P82987 1691 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 ALS2Q96Q42 1657 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 PI4K2BG5E9Z4 385 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 CALB1P05937 261 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 SLC29A2Q14542 456 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 ZNF699Q32M78 642 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 FOXR1Q6PIV2 292 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 FAM47EQ6ZV65 393 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 TMEM117Q9H0C3 514 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 PPP1R9AQ9ULJ8 1098 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 MAD1L1Q9Y6D9 718 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 ZNF142P52746 1687 aaPredicted RBP19.75■□□□□ 0.75
USP48-204ENST00000400301 CCDC14Q49A88 953 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 CBWD6Q4V339 395 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 CBWD3Q5JTY5 395 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 CBWD5Q5RIA9 395 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 PRAMEF18Q5VWM3 479 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 IZUMO3Q5VZ72 239 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 OR6B2Q6IFH4 312 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 ATL2Q8NHH9 583 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 PYROXD1Q8WU10 500 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 PCDHB2Q9Y5E7 798 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 ZBTB7AO95365 584 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 MSH2P43246 934 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 PPP2R5CQ13362 524 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 HYIQ5T013 277 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 C1orf186Q6ZWK4 172 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 HVCN1Q96D96 273 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 C18orf8Q96DM3 657 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 THOC1Q96FV9 657 aaKnown RBP19.75■□□□□ 0.75
USP48-204ENST00000400301 EFCC1Q9HA90 598 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 KLHL11Q9NVR0 708 aa19.75■□□□□ 0.75
USP48-204ENST00000400301 HLA-DRAP01903 254 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 CYP3A4P08684 503 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 SLC13A5Q86YT5 568 aaPredicted RBP19.74■□□□□ 0.75
USP48-204ENST00000400301 POP1Q99575 1024 aaKnown RBP19.74■□□□□ 0.75
USP48-204ENST00000400301 MYOZ2Q9NPC6 264 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 FRMPD4Q14CM0 1322 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 CHN1P15882 459 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 PCK1P35558 622 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 RARRES1P49788 294 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 SNRPFP62306 86 aaKnown RBP19.74■□□□□ 0.75
USP48-204ENST00000400301 MICALL2Q8IY33 904 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 CCDC110Q8TBZ0 833 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 DBR1Q9UK59 544 aaKnown RBP19.74■□□□□ 0.75
USP48-204ENST00000400301 ASTN1O14525 1302 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 GOLGA8MH3BSY2 632 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 TLR2O60603 784 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 SLC1A1P43005 524 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 ZNF568Q3ZCX4 644 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 DARS2Q6PI48 645 aaKnown RBP19.74■□□□□ 0.75
USP48-204ENST00000400301 EXOC8Q8IYI6 725 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 PDIK1LQ8N165 341 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 MSL3Q8N5Y2 521 aaKnown RBP19.74■□□□□ 0.75
USP48-204ENST00000400301 FBXO25Q8TCJ0 367 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 FBXO40Q9UH90 709 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 IP6K2Q9UHH9 426 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 DUOX1Q9NRD9 1551 aa19.74■□□□□ 0.75
USP48-204ENST00000400301 WDR91A4D1P6 747 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 AGTP01019 485 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 VIL1P09327 827 aaKnown RBP19.73■□□□□ 0.75
USP48-204ENST00000400301 PRKCIP41743 596 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 NPTX2P47972 431 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 CFAP157Q5JU67 520 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 FOXR2Q6PJQ5 311 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 HEXIM2Q96MH2 286 aaKnown RBP19.73■□□□□ 0.75
USP48-204ENST00000400301 FAM118BQ9BPY3 351 aa19.73■□□□□ 0.75
USP48-204ENST00000400301 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms