RNA–Protein interactions for RNA: ENST00000380358.8

CHD3-203, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2 BASIC

Gene CHD3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-203ENST00000380358 REXO4Q9GZR2 422 aaKnown RBP13.13□□□□□ -0.31
CHD3-203ENST00000380358 IQCMA0A1B0GVH7 501 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 TRIM49BA6NDI0 452 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 SLFN12LQ6IEE8 588 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 TSC22D3Q99576 134 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 PLEKHA5Q9HAU0 1116 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 LSM7Q9UK45 103 aaKnown RBP13.12□□□□□ -0.31
CHD3-203ENST00000380358 KDM5BQ9UGL1 1544 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 TARSL2A2RTX5 802 aaKnown RBP13.12□□□□□ -0.31
CHD3-203ENST00000380358 ATP1A1P05023 1023 aaKnown RBP13.12□□□□□ -0.31
CHD3-203ENST00000380358 SERPINB4P48594 390 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 MED21Q13503 144 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 AMHR2Q16671 573 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 PTRHD1Q6GMV3 140 aaKnown RBP13.12□□□□□ -0.31
CHD3-203ENST00000380358 SMIM5Q71RC9 77 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 GALNT4Q8N4A0 578 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 CAMKK1Q8N5S9 505 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 NCK2O43639 380 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 ENO3P13929 434 aaPredicted RBP13.12□□□□□ -0.31
CHD3-203ENST00000380358 NR1D1P20393 614 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 HORMAD1Q86X24 394 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 PCDHB7Q9Y5E2 793 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 IFT140Q96RY7 1462 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 NDUFS3O75489 264 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 DPYDQ12882 1025 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 NAALADL2Q58DX5 795 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 GAS2L3Q86XJ1 694 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 STAG2Q8N3U4 1231 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 RNASE11Q8TAA1 199 aaKnown RBP13.12□□□□□ -0.31
CHD3-203ENST00000380358 OSGEPL1Q9H4B0 414 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 APPL1Q9UKG1 709 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 RRP15Q9Y3B9 282 aaKnown RBP13.12□□□□□ -0.31
CHD3-203ENST00000380358 DYNC1LI2O43237 492 aaPredicted RBP13.12□□□□□ -0.31
CHD3-203ENST00000380358 AKAP10O43572 662 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 TRIP4Q15650 581 aaPredicted RBP13.12□□□□□ -0.31
CHD3-203ENST00000380358 DTX3LQ8TDB6 740 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 LEMD3Q9Y2U8 911 aa13.12□□□□□ -0.31
CHD3-203ENST00000380358 SNAP23O00161 211 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 PDE8BO95263 885 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 ZFXP17010 805 aaPredicted RBP13.11□□□□□ -0.31
CHD3-203ENST00000380358 TNFAIP2Q03169 654 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 APOA5Q6Q788 366 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.11□□□□□ -0.31
CHD3-203ENST00000380358 SLC9A2Q9UBY0 812 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 ECE2O60344 883 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 C11orf57Q6ZUT1 292 aaPredicted RBP13.11□□□□□ -0.31
CHD3-203ENST00000380358 POMGNT2Q8NAT1 580 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 PROSER3Q2NL68 480 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 DDI2Q5TDH0 399 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 USP44Q9H0E7 712 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 AVPR1AP37288 418 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 LUZP2Q86TE4 346 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 ZNF589Q86UQ0 364 aaPredicted RBP13.11□□□□□ -0.31
CHD3-203ENST00000380358 SFR1Q86XK3 245 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 PUS7LQ9H0K6 701 aaKnown RBP13.11□□□□□ -0.31
CHD3-203ENST00000380358 CYP27B1O15528 508 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 NDEL1Q9GZM8 345 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 EXO5Q9H790 373 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 HOXC10Q9NYD6 342 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 POLR3AO14802 1390 aaPredicted RBP13.11□□□□□ -0.31
CHD3-203ENST00000380358 A0A087X0T9 212 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 NPHP3-ACAD11A0A0J9YXS1 232 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 HPGDP15428 266 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 RANBP1P43487 201 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 EN1Q05925 392 aaPredicted RBP13.11□□□□□ -0.31
CHD3-203ENST00000380358 CEP55Q53EZ4 464 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 MIIPQ5JXC2 388 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 TRAF7Q6Q0C0 670 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 LRRC71Q8N4P6 559 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 ZNF555Q8NEP9 628 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 MTERF3Q96E29 417 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 PBKQ96KB5 322 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 GPR63Q9BZJ6 419 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 NDOR1Q9UHB4 597 aa13.11□□□□□ -0.31
CHD3-203ENST00000380358 PRG3Q9Y2Y8 225 aaPredicted RBP13.11□□□□□ -0.31
CHD3-203ENST00000380358 ANGPT2O15123 496 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 PHKG2P15735 406 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 DNAJB2P25686 324 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 TMEM154Q6P9G4 183 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 RNF146Q9NTX7 359 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 AK9Q5TCS8 1911 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 IGFBP4P22692 258 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 ARF5P84085 180 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 SEPT2Q15019 361 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 SYNE4Q8N205 404 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 TSSK1BQ9BXA7 367 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 CTIFO43310 598 aaKnown RBP13.1□□□□□ -0.31
CHD3-203ENST00000380358 PFKFB2O60825 505 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 YWHAZP63104 245 aaKnown RBP13.1□□□□□ -0.31
CHD3-203ENST00000380358 CSNK2BP67870 215 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 PADI6Q6TGC4 694 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 RBM41Q96IZ5 413 aaKnown RBP13.1□□□□□ -0.31
CHD3-203ENST00000380358 FAM81BQ96LP2 452 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 GJB4Q9NTQ9 266 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 HDAC4P56524 1084 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 NME5P56597 212 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 CCDC92Q53HC0 331 aaPredicted RBP13.1□□□□□ -0.31
CHD3-203ENST00000380358 RNF149Q8NC42 400 aa13.1□□□□□ -0.31
CHD3-203ENST00000380358 PAIP2BQ9ULR5 123 aaKnown RBP13.1□□□□□ -0.31
CHD3-203ENST00000380358 STAP1Q9ULZ2 295 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms