RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 MAPRE3Q9UPY8 281 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 PRPSAP2O60256 369 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 SNX4O95219 450 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 OTUD4Q01804 1114 aaKnown RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 TRIP13Q15645 432 aaPredicted RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 DIS3L2Q8IYB7 885 aaKnown RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 DPP10Q8N608 796 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 CENPTQ96BT3 561 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 THAP9Q9H5L6 903 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 XKR8Q9H6D3 395 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 GGA2Q9UJY4 613 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 EFR3BQ9Y2G0 817 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 ZNF879B4DU55 563 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 ZCCHC18P0CG32 403 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 DNAJC24Q6P3W2 148 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 DSTYKQ6XUX3 929 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 LRRC6Q86X45 466 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 AK8Q96MA6 479 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 ABLIM1O14639 778 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 ACADLP28330 430 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 ZNF57Q68EA5 555 aaPredicted RBP9.19□□□□□ -0.94
LIG3-202ENST00000378526 CCNYQ8ND76 341 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 RRN3Q9NYV6 651 aa9.19□□□□□ -0.94
LIG3-202ENST00000378526 O00370 1275 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 SNAPC5O75971 98 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 GSTT1P30711 240 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 CYP2J2P51589 502 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 PSMD4P55036 377 aaKnown RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 NCKAP1LP55160 1127 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 DDR2Q16832 855 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 ESRP1Q6NXG1 681 aaKnown RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 EHBP1L1Q8N3D4 1523 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 SAMD3Q8N6K7 520 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 KCNH5Q8NCM2 988 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 SNIP1Q8TAD8 396 aaKnown RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 L3MBTL3Q96JM7 780 aaPredicted RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 NT5C1BQ96P26 610 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 USP44Q9H0E7 712 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 PHF8Q9UPP1 1060 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 NOD1Q9Y239 953 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 ZBTB1Q9Y2K1 713 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 RTEL1-TNFRSF6BF6WH68 1400 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 EFCAB10A6NFE3 127 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 IFNA16P05015 189 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 RXRGP48443 463 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 ZSWIM7Q19AV6 140 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 ANKS3Q6ZW76 656 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 GPBP1Q86WP2 473 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 RYBPQ8N488 228 aaPredicted RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 TMC2Q8TDI7 906 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 ERP27Q96DN0 273 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 CRNNQ9UBG3 495 aaPredicted RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 NUP50Q9UKX7 468 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 F6X3S4 739 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 SFNP31947 248 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 RBBP7Q16576 425 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 C5orf22Q49AR2 442 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 POLR1BQ9H9Y6 1135 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 PCDHB4Q9Y5E5 795 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 ABCC12Q96J65 1359 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 A0A087WXM4 84 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 GRM8O00222 908 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 ENO3P13929 434 aaPredicted RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 SCTRP47872 440 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 USP14P54578 494 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 EFL1Q7Z2Z2 1120 aaKnown RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 ZNF804AQ7Z570 1209 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 CHERPQ8IWX8 916 aaKnown RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 DDIASQ8IXT1 998 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 COLGALT2Q8IYK4 626 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 LRRC20Q8TCA0 184 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 XPO6Q96QU8 1125 aaKnown RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 ELOVL6Q9H5J4 265 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 MAD2L2Q9UI95 211 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 PCDHA12Q9UN75 941 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 MYRFQ9Y2G1 1151 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 TELO2Q9Y4R8 837 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 V9GYQ6 96 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 MYH8P13535 1937 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 CCDC195A0A1B0GUA6 201 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 PPP6R2O75170 966 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 RCVRNP35243 200 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 PSMC2P35998 433 aaKnown RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 SPIRE1Q08AE8 756 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 NFIL3Q16649 462 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 DYMQ7RTS9 669 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 RORBQ92753 470 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 HINFPQ9BQA5 517 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 GCNT4Q9P109 453 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 MAP3K15Q6ZN16 1313 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 METTL21EPA6NDL7 271 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 SAGE2PA6NJ88 616 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 UBAP1LF5GYI3 381 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 TNPO2O14787 897 aaKnown RBP9.18□□□□□ -0.94
LIG3-202ENST00000378526 TCF4P15884 667 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 TRAPPC10P48553 1259 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 PEX5P50542 639 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 AP1S1P61966 158 aa9.18□□□□□ -0.94
LIG3-202ENST00000378526 TNFAIP8L3Q5GJ75 292 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms